Manihot esculenta (cassava): 110614388
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Entry
110614388 CDS
T05761
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110614388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110614388
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110614388
Spliceosome [BR:
mesc03041
]
Complex C
Other components
Step II factors
110614388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
TsaE
ABC_tran
Sigma54_activ_2
AAA_16
T2SSE
Flavi_DEAD
PhoH
Motif
Other DBs
NCBI-GeneID:
110614388
NCBI-ProteinID:
XP_043812642
LinkDB
All DBs
Position
5:complement(21209374..21214868)
Genome browser
AA seq
1190 aa
AA seq
DB search
MATTTQTRDDDGLKKLEYLSLVSKVCTELETHLGFGDKVLAEFITELGRNCETVDEFDSK
LKENGAEMPDYFVRTLLTIIHAILPPKPKSGKESKNKDTASLADAKNSKFRALAIADSKE
RAKDLERELEMEALERRNEQEKAEDGRNRDRDRDWRGKDRDRYWDRSDRDERRRDRDYDN
GHDGRGGDYRSRGKQRDRHDRHRRNGSEENGYHDREGGESERDRRNGHNTSSEPELYKVY
KGRVSRVMDSGCFVQLNDLRSKEGLVHVSQIANRRIGNAKDVVKRDQEVYVKVISISGQK
LSLSMRDVDQNTGKDLLPLKKSSDDDDTFRTNPSASKEGPVTRTGLSGIRIMEEDDAVPS
RRPLKRMSSPERWEAKQLIASGVLSVKEYPMYDEERDGMLYQEEGAEEDLEIELNEDEPA
FLQGQTRYSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNR
PWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAFGKALTFGQRSKLSIQEQRQSLPIY
KLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTRGKIGCTQPRRVAAMSVAK
RVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDDNLSQYSVIMLDEAH
ERTIHTDVLFGLLKQLVKRRPDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILY
TKQPESDYLDAALITVLQIHLTEPEGDVLLFLTGQEEIDFACQSLYERMKGLGKNVPELI
ILPVYSALPSEMQSRIFEPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPK
QGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGFT
TLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPP
LSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAV
YEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFTKIRKAIT
AGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVI
DPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacaacacaaacacgagatgacgatggccttaagaaactggaatacttatct
ctcgtatctaaggtttgcacggaactcgaaactcacttagggtttggagacaaagtattg
gcggagttcatcaccgaattaggccgaaactgtgagaccgttgacgaatttgattcgaag
ttgaaggaaaacggtgccgagatgcccgattactttgtccgcacattactaactatcatt
cacgccatccttccgcccaagcccaagtctggcaaggaatcaaagaataaagacaccgct
tctctcgctgatgctaaaaattccaaattcagagctcttgctattgcagacagtaaggag
agagccaaggaccttgaacgcgagttggaaatggaggctttggaaagaaggaatgaacag
gaaaaagcagaggacggtaggaacagagacagagacagagactggaggggtaaggataga
gataggtattgggatagatctgatagagatgagagacgtagagatagagactatgataat
ggtcatgacggtagaggtggtgattataggagtagaggaaagcagagggataggcatgac
aggcataggagaaatgggagtgaagaaaatggttatcatgacagggagggtggtgaaagt
gaaagagataggaggaatggacacaatacttccagtgagcctgaattgtacaaggtgtat
aagggtagggtatcaagagtgatggactcaggttgttttgtgcaattgaatgaccttagg
agcaaggagggtttggttcatgtttctcagattgcaaataggaggattggtaatgccaag
gatgttgtgaagcgggaccaggaggtttatgttaaggtgatttcaatttccggacagaag
ttgagtctttccatgagggatgttgatcagaatacgggtaaggatctacttcctttgaag
aagagctcagatgatgatgatacttttaggaccaatccttcagcatccaaggagggacca
gtgaccaggacagggctttctgggattaggatcatggaggaggatgatgctgttccatcg
cgtcgaccattgaagagaatgagctcacctgagagatgggaggcaaaacagttgattgca
tctggagttttaagtgtcaaagagtatcccatgtatgatgaagagcgagatgggatgctt
tatcaggaagagggcgctgaggaggatcttgaaattgagttaaatgaagatgagcctgca
tttttgcaagggcagactcggtactctgttgatatgtctccggtgaagatttttaagaat
ccagaaggatcattgagtcgtgcagctgcccttcagtctgcacttataaaggagagaaga
gaggtaagggaacaacagcagaggacgatgcttgattcaataccaaaggatcttaatcgt
ccttgggaagacccaatgcctgagactggtgagaggcatctggctcaggagcttagaggt
gttgggttatctgcttatgacatgcctgagtggaagaaggatgcatttggaaaagcttta
acatttgggcaaagatcaaagctatcaattcaggagcagaggcagagcttgccaatctac
aaattgaagaaagagttaattcaagctgtccatgataatcaggttctggttgtaattggt
gagacaggctctggtaagactacccaggtgacacagtatcttgctgaggcaggttatact
acgaggggtaagattggatgtactcagccacgtcgggtggctgcaatgtctgtggccaag
agggtggctgaagagtttgggtgtcgtttaggggaggaggttggttatgccattcgcttt
gaggattgtactggaccggacacagtgatcaagtacatgacagatggtatgctacttagg
gaaattctgattgatgataatctttctcagtactcggtgataatgcttgatgaagctcat
gagaggacaatccacactgatgtcctttttgggttacttaaacagcttgtaaagaggaga
cctgatcttcgcttgattgtcacatctgccacactagatgcagagaaattttcaggatat
ttcttcaactgtaatatattcacaattcctgggagaacttttcccgtggagatattgtat
accaaacagccagaaagtgactacttagatgcagctttgatcactgtgctacagatccac
ttgacagaacctgaaggtgacgtacttcttttcttgactggtcaggaggagattgatttt
gcatgccaatctctctatgagaggatgaagggtttaggaaaaaatgttcctgaattaatt
atattacctgtttatagtgcactccccagtgaaatgcagtccaggatatttgaacctgcc
ccaccaggtaagaggaaggttgttgtggcaaccaatattgctgaggcctcactgacaatt
gatgggattttttatgttattgatcctgggtttgcaaagcagaatgtatataatccaaag
caggggcttgattctctggttataacacccatttcacaagcatctgccaagcaacgagct
ggaagagctgggcgtactggaccgggaaaatgttatcgtctgtatactgaaagtgcatat
cgtaatgagatgtcgccgacctcaattccagaaattcaaagaataaaccttggatttact
acactcacgatgaaggcaatgggaattaatgatctattatcttttgattttatggatcca
ccatcaccacaggccctcatatctgccatggaacaattatacagtctaggagctttggat
gaagaggggcttctgaccaaattgggaaggaaaatggctgaatttcccctggatccgcca
ttgtcaaagatgttgctggcgagtgtagatcttgggtgcagtgatgagattttgactatt
attgctatgatccaaactggtaatatattctacaggcctagggaaaaacaagctcaagca
gatcagaagagggccaagtttttccagcctgagggagaccatttgaccttacttgctgta
tatgaggcttggaaagctaagaacttttcagggccttggtgttttgagaattttgttcag
tccagatccttgaggagggcacaggatgtcaggaaacagcttctctcaatcatggataaa
tacaaattggatgttgtgagtgctggaaagaatttcacgaagataagaaaagcgattaca
gcgggattcttttttcatgctgccagaaaggatccacaagaggggtatcggaccctagtt
gagaaccaaccagtttacattcatccaagcagtgctctttttcagagacaaccagactgg
gtcatctaccatgaactggtaatgactacaaaagagtacatgcgcgaggtgactgttata
gatcccaaatggctcgtggaactggcacctaggttctttaaggtggcagatccaacgaaa
atgagcaagaggaaacgtcaagaaaggattgaaccactatatgacagataccatgaacct
aattcctggcgattgagtaagcggcgagcgtga
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