Manihot esculenta (cassava): 110615145
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Entry
110615145 CDS
T05761
Name
(RefSeq) nuclear pore complex protein NUP62 isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110615145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesc03019
]
110615145
Messenger RNA biogenesis [BR:
mesc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110615145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Nucleoporin_FG
ATG17_like
COG3_N
Motif
Other DBs
NCBI-GeneID:
110615145
NCBI-ProteinID:
XP_021612560
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Position
5:complement(4287756..4296730)
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AA seq
781 aa
AA seq
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MSGFSFSSSSQSSSSSPFSFGSSTSPFGSTTTGSGLSFGSSPFASANPSSSSSSSSTPLS
FSLNTSSNSNPSSASSVSPFGFGFSTSSSSSASSNPSFSFSFGSAPAATSSTPSLFVSAS
GSTSSPFAQAASSASSGSNLFGAVSSATSSASTLFGTVSSAPSSASPLFGAASAASSTGT
SLFGGNTSSPLFATSASPLFGTTPSVASSAPPQFGTTSSAASSSSPLFGTTSSAASSPSP
LFGTSSSLFGTTSSAASSGPSPFGTSSSAASSGSFLFGTSSSATSSGPSLFGSSGASIGT
TTSNLFASSTTASTPAFSSNLFSSTSSLNSSSASPFSTAATGFSLSKSTPSLTSTVAPLT
QSSSASTSGFSVGTPSSASSVSASSFSFGTPSSASSQSSFSFSNAASSSAPAVSTTLPAK
PTSPSPLFSTVTTTNALTPAAGTAVASSSATASTLTLHASGASASSSATSATTAASSGTT
SSFTGFGVSTAPASSGSTSSYTGFSLSTKPSVPASTSQAQSTIAAPLFSVSTSTSAATTT
SSSSATTSQMTLPLAVASSSGTTSSVTAAISSTPKLPSEITGKTVEEIIKEWNAELQERT
GKFRKQAAAIAEWDKRILHNRDVLLRLEIEVAKVVETQASLERQLELIETHQQEVDKALQ
SMEEEAERIYKDERGLLLDDEAASTRDAMYEQAELIERELEQMTEQIKSVIDTLNSSQGG
DLDTIDKMTPLDVVVRILNNQLSSLMWIDEKAEEFSSRIQKLATQGSAADRELMGPKYWM
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttctctttctcatcctcttctcaatcatcttcctcatctccattctcattc
ggatcctcaacttctccgtttggatccacaaccactggttccggattatctttcggatct
tcccctttcgcttctgcaaaccctagctcatcttcctcttcttcctccaccccattgtct
ttttccctcaacacttcgtcaaactctaaccctagctcagcttcttccgtttctccattc
ggtttcggattctctacctcttcatcctcctccgcttcctccaacccttccttctccttc
tccttcggatcagctcccgctgccactagttccactccatctctctttgtttctgcgtct
ggttccacctcatcgccatttgcacaagctgcttcctctgcaagctcgggttcaaacctt
tttggggctgtttcatctgcgactagttctgcgtctaccttgtttgggactgtttcttca
gctccaagttctgcgtcgcctctgtttggtgcagcgtcagcggcatcaagcaccggcacg
tccttgtttgggggaaatacgtcttcaccattgtttgcaacaagcgcttctcccctgttt
ggaacaactccatcagtagcaagttctgctcccccccagtttggcacaacttcttctgct
gcaagttcttcttcgcccttgtttggaacaacttcatctgcagcgagttctccttcaccc
ctgtttggcacaagttcatctttgttcggaacaacttcgtctgcggccagttccgggcca
tctccgtttggtacatcctcatctgctgcgagttcaggttcattcctgtttgggacgtct
tcatctgctacaagttctgggccgtccctgtttgggtcatcaggtgcttcaattggcact
actacatctaacttgtttgcctcgtctacaacagcttcaactcctgcattttcgtctaat
ttgttctcttcaacttcctctttgaattcaagctctgcgtcgccattctccacggctgca
acaggattttccttatcgaaaagcactccaagtttaacatctacggtagctcctctgaca
caatcttcatcagcaagcacttcgggcttctctgttgggacaccatcttctgcatcttca
gtaagcgcttctagcttttcgtttgggacaccgtcttctgcatcgtcccaatcttccttt
agctttagcaatgcagcttcttcatctgcccctgctgtctccaccacccttcctgcaaaa
ccaacatctccatcgccgttgttttctacagtcacaaccacaaatgctcttactccagct
gctggtactgcagtggcttcttcttctgccacagcttctacgcttactttacatgcatct
ggtgcaagtgcttcttcttctgctacttcagctaccacagctgcttcttctggaactact
agttcctttactggttttggtgtgtccactgcacctgcttcctcggggagtactagttcc
tacacaggattttccttatcaaccaaaccatcagttcctgcgtcaacatcacaagctcaa
tcaactattgctgcacccttattcagtgtctctacttctacttctgcagctacaacaact
tccagttccagtgctaccacatctcagatgacacttcctcttgctgtggcttccagcagt
gggacaacttcaagtgtgaccgctgctatatcttctacaccaaaattaccatctgagatt
acaggcaagactgttgaggagatcatcaaagagtggaatgcagagctgcaagagcgcacc
gggaaatttcgcaagcaagctgctgcaatagctgaatgggataagaggatcttgcacaat
cgtgatgttcttcttaggcttgagattgaggtggcaaaagttgttgagacacaagctagc
ttggaacggcaattggagttaattgagacccatcaacaggaggttgataaggctttgcag
agtatggaagaagaagctgaacgaatttacaaggatgagcgtggactgcttcttgatgat
gaagctgcatcaactcgagatgctatgtacgagcaagctgagcttatagagagagaactg
gagcagatgactgaacaaataaaatctgttattgataccttgaactcgagccagggtggt
gatctggacacgattgataagatgactccattggatgtggttgtccgaatcttgaacaat
caactgagttctttgatgtggattgatgagaaggctgaagaattctcgtctcgcattcag
aagcttgctactcaaggttctgcagcagatcgcgagctgatgggtccaaaatattggatg
tcttga
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