Manihot esculenta (cassava): 110615513
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Entry
110615513 CDS
T05761
Name
(RefSeq) lysine-specific histone demethylase 1 homolog 3
Organism
mesc
Manihot esculenta (cassava)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
SWIRM
DAO
FAD_oxidored
Pyr_redox_2
Thi4
HI0933_like
FAD_binding_3
FAD_binding_2
GIDA
NAD_binding_9
Lycopene_cycl
Pyr_redox
Pyr_redox_3
MurD-like_N
Trp_halogenase
AlaDh_PNT_C
Motif
Other DBs
NCBI-GeneID:
110615513
NCBI-ProteinID:
XP_021613084
LinkDB
All DBs
Position
5:26099531..26112312
Genome browser
AA seq
1997 aa
AA seq
DB search
MEGEQKNYGAKVRSKPIEIGLDSDDDEPIRSLFKLKRPRNPKKVKVVLDKIEAREEKKDN
DFGGMDDTLASFRKRLKGPKKDIGSVIIRPLEDKVDNGYSEGGDVLDLATKKVVVEGKRK
EKVKKTNIGSKRETNRGDATVFDTLRSQVEVLKEEDSFPSGGSSGSSDQEEDSLSHIFHK
AQSGPIRKSLINPFSKQNSRVHNLEDGLSPTSECISELSKSVIACIPGTASASNVVSTDL
KAEDGCTIVSGLRPSDFVSEHSKTVKHQRLDNGFSQSYFMEGNSGENMKSSCQRHARSVE
FISSPSAFHCSGIQDERIVDPGVSNVKEEPVMNPCAPNRVCDENCSFSGQVDNLDDQSMK
NGLKLCSIRKVNTLIHDVAKVPTSASVQFEDIDGFSEQKSNKDLRDAWDHQHYSRMGEAA
KTDTTLEFDQCPEASLHVQSHLADSTFASPKIEETCSDCDFPNDYGEKSYIASVSPKRKT
AATSDGKLPLKTATSVQEDKDACSYHMNHQGNLETSVHPNKSSISIQKCSPVMHQSIHSE
DATKLNCVPSHDYLSINEETHGASPLSITPEENESYPDDVVSIPDSEIKDGKLSSVQRGA
RKAKKRRHGDMAYEGDPDWEILINDQRYQENNQVMDTDRCFRMREKSDSSSISFTEADNG
GAAAVSVGLKAHAAGPVEKIKFKEVLKRKGGLQAYLECRNHILGLWSKDVTRILPLADCG
VTDTPSEEESSRASLIRDVYAFLDQSGYINIGIASNKEKAEPCVRHNYKLVEEKTFEVKP
GASVADLEDGVSYILGQFKSSETPLEANNTATVDNENPASKATKSWELVTPVKVEVTSVT
ERWECPADDIQQDATLKAKLPNGFVNVEDASDYPFCATLDSRTGVISPDLRNDVQSVQSS
SGDDTRGSHSIQCDSEYRKKIIVVGAGPAGLTAARHLDRQGFSVTLIEARNRIGGRVYTD
RSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDIVTREKV
PTDLDEELEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKSRRMARPGTDIDETEL
QNAMDNFSVSKTCSSDGGVPEKNCSKEEILSPLERRVMNWHFAHLEYGCAALLKEVSLPY
WNQDDVYGGFGGAHCMIKGGYSNVAESLCEGLCIHLNHVVTDISYNTKETGLSENNLHHK
VKVSTSNGGEFFGDAVLITVPLGCLKAETIKFNPQLPQWKYSSIQRLGFGVLNKVVLEFP
EVFWDDSVDYFGATAEETDRRGHCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHV
SHALMVLRKLFGEAVVPDPVASVVTDWGRDPFSYGAYSYVAIGSSGEDYDILGRPIENCL
FFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDYTAEVEAMEALQRHSECERDEV
RDITKRLEAVELSNVLYRNSLDGAQILTREALLRDMFFSAKTTAGRLHLAKKLLNLPVET
LKSFAGTRKGLTTLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKV
CVHTSRDIRAIASQLVSVWLEVFRREKASNGGLKPLRQATALDSSKRKSVHNPASGKPPL
RTHSGGGGLETRACLEVPQSSGSHVHSNANVKKGNGKLVKVETLKDSTSHASLGSQDAEV
EEESTYAMSEEELAALAAAEAAHAAARAAAEAYASAEAKSNTALQLPKIPSFHKFARREQ
YAQMEDYDIRKNWSGGILGKQDCASEIDSRNCRVRDWSVDFSATCVNLNSSRISVDNLSQ
QSHSNEIACHMNFREQSGETAAVDSSLFTRAWVDTAGNEGIKDYHAIERWQSQAAAAESN
FFHPATHIKDEEDSNTCSRPPTWKNDGRLNESSISQVPLNKEPQKNHLRGADRIKQAVVD
FVASLLMPVYKARKIDREGYKSIMKKTATKVMEQATDTEKTMAVSEFLDFKRKNKIRAFV
DKLIERHMAMKPAVKPS
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atggaaggggaacagaagaactatggggctaaggtcagatccaagcctattgagattggt
cttgattctgatgatgatgagccaattaggtctctattcaagttgaagagacctagaaat
cctaaaaaggttaaggtggttttggacaagattgaagccagggaagaaaagaaggacaat
gattttgggggcatggatgacacactagccagttttaggaagaggttgaagggtcctaag
aaagatattggatctgttattataaggccgttggaggataaggtggataatggttacagt
gaaggcggtgatgtactggacttagctacaaaaaaagtagtagtagaaggcaaacgcaag
gaaaaggttaaaaaaacaaatattggctctaagagagagacgaataggggtgatgcgaca
gtttttgatactttgagatctcaggtagaagttctaaaggaggaagattcatttcctagt
gggggctcaagtggttcttcggatcaagaggaagactcattatcgcatatttttcataag
gcacaatctggtccaatacggaagtctcttataaatccattttcaaaacagaatagtagg
gttcataatttagaggatgggttgagccctacctctgaatgtatttcagagctttccaag
tccgtgattgcatgtatacccggaactgcttctgcctcaaatgtagtctcaacagatctg
aaagctgaagatggttgtactatagttagtggtttgagaccatcagattttgtctctgaa
cacagtaagacagtgaaacaccaaaggttagataatggtttttctcaatcttattttatg
gaaggtaattctggtgaaaatatgaaatccagttgccaaagacatgctagatcagtggaa
tttatttcctcaccttcagcatttcattgtagtgggattcaagatgaaaggattgtagac
cctggtgtctcaaatgttaaagaagaacctgtgatgaatccttgtgctccaaatagagtt
tgtgatgaaaattgttccttttctggccaagtggataacttggatgatcagtctatgaaa
aatggtttaaagctttgttctatcagaaaggtaaacactttgatccacgatgtcgcgaaa
gtgcctacttctgcgtccgtgcagtttgaagacattgatgggttcagcgagcaaaagtcc
aacaaagatttaagggatgcatgggaccatcaacactattcaaggatgggtgaagctgct
aaaactgacaccacacttgagtttgatcaatgcccagaagcttccctgcatgttcagtcc
cacttggctgactctacttttgcttcaccaaagattgaagaaacttgtagtgattgtgat
tttccaaatgattatggtgagaagtcatatattgcttcagtttctcccaaaaggaaaact
gctgcaacatctgatggcaagttacctttgaaaactgcaacatctgttcaagaagataaa
gatgcatgtagctaccacatgaaccaccaagggaatttagaaacttctgttcatccaaac
aagtcctccatctccattcagaagtgcagccctgttatgcatcaaagtatacattcagag
gatgcaacaaaattgaactgtgttccaagtcatgattatctttccatcaacgaggagact
catggagcttctcccctgtctataactccagaggaaaatgaaagttacccagatgatgta
gtatccattcctgactctgaaatcaaagatgggaagttatcatctgttcagcgtggtgca
cggaaggccaaaaagcgtagacatggggacatggcttatgaaggggatcctgattgggaa
atcttgataaatgatcaacgttatcaggaaaacaaccaggttatggacactgataggtgt
tttagaatgagagagaaatctgattcttcttcaattagttttacagaggctgacaatggt
ggggcagcagcagtttcagttggattgaaagctcatgctgctggtccagttgagaagata
aaatttaaggaggtcttaaagcgcaaaggtgggcttcaagcatatttagaatgcaggaac
catatcttgggtctgtggagtaaagatgttacgcgtattttgcctctggctgattgtggt
gtcacagatactccttctgaggaggaatcttcacgtgcttctctaattagggatgtctat
gcatttctcgatcagagtggttatataaatattggaattgcttctaataaggagaaagca
gaaccttgtgtgaggcataattataaacttgttgaagaaaaaacctttgaggtaaagcct
ggggcttcagttgctgacttggaagatggagtctcatacatccttggtcaatttaaaagt
tctgaaactccattggaggcaaataatacagctacagttgataatgagaacccagcatca
aaagctacaaaaagctgggagcttgttactccagtgaaagtggaagtaactagtgtaaca
gaacgctgggaatgcccagctgatgatattcaacaagatgccactctcaaagcaaaatta
cccaatggatttgtcaatgtggaagatgcgagtgattatccattttgtgcaacgctggat
agcaggacaggcgtcattagcccggatttaaggaatgatgtgcagagtgttcaatcttcc
tccggcgatgatactagaggaagtcacagtattcagtgtgattctgaatacagaaagaaa
atcattgtggtaggagctggtcctgctggcttaaccgccgctcgccacttggatcgtcag
ggtttttctgtgactctgattgaggctaggaataggatagggggccgtgtatatacagat
cgctcatctctttcagttcctgttgatcttggggctagcattattactggtgttgaggct
gatgtggcaactgaaagaagaccagatccttcctctctgatttgtgctcagttaggcctt
gagttgacagttctgaatagtgactgcccactttatgatatcgtgaccagagaaaaagtt
cctacagatctggatgaagaattggaagcagagtacaacagccttcttgatgacatggta
ttacttgtggcacagaagggggagcatgcaatgaaaatgtctctcgaggatggtttagaa
tatgccctcaagagtcgacgtatggcacgaccaggaacagatattgatgaaactgaattg
caaaatgccatggacaatttttctgtttcaaaaacttgtagttctgatggtggagttcct
gaaaaaaattgttcaaaagaggaaattttgagtccacttgagaggagggtcatgaattgg
cattttgcccatttggagtatggttgtgctgctttattgaaggaagtatctcttccctac
tggaatcaagatgatgtttatggaggttttggaggagctcattgtatgattaaagggggt
tacagtaatgttgcagagtctctttgtgaaggtctatgtattcacttgaatcatgtagtc
acggatatttcatacaacaccaaggaaactggattgagtgaaaataatctgcatcacaaa
gttaaggtttccacatcgaatggtggtgaattttttggagatgctgttttgatcactgtg
ccacttgggtgtttgaaagcagaaaccataaaatttaaccctcaattgccccaatggaaa
tattcttctattcagcgacttggttttggagttcttaataaagtagtgttggaattcccg
gaggtgttttgggatgattctgtggattactttggagctactgctgaggaaactgatcgg
agaggccattgttttatgttttggaatgtgaagaaaactgttggggctcctgttcttata
gcattagtggttggtaaagcagctatagatggtcaaagtatgagctcatcagatcatgtg
agccatgcattaatggttcttcgtaagctttttggggaggctgtagtacctgatccagtt
gcatcagtagtgactgattggggtagggatccattcagctatggtgcgtactcctatgtt
gccattggatcatctggggaagactatgatatattgggcaggcctattgagaactgtttg
ttttttgctggtgaagctacctgcaaggagcatcctgacactgttggtggtgctatgatg
agtgggctccgagaggcagtccgcataattgacattctaaatactggaaatgattacaca
gcagaagtggaagcaatggaagctttacagagacactcagaatgtgaaagggatgaagtt
agggacataacgaagagacttgaggcggttgagctttccaatgtcctctacaggaattct
ttggacggagcccaaattttaactagggaagcattactacgagatatgttcttcagtgca
aaaactaccgcaggacgattgcatctggcaaagaaattgttgaatcttcctgttgagacc
ttgaagtcctttgccgggaccagaaaagggcttaccacgcttaattcatggattttggat
tcaatggggaaggatggaactcaacttttgcgtcactgcgttcgtcttcttgtacttgtt
tcaactgatctacttgcagtgcgtttgtcaggcatagggaaaactgtgaaagaaaaagtt
tgtgtgcatactagccgtgatatacgtgccatagcaagtcagttggttagcgtatggctt
gaagtcttccgcagagaaaaagcttcaaatggtgggctgaagccattgaggcaagcaact
gctttggattcttcaaagagaaaatctgttcacaatccagcctcagggaagccaccgctg
cgcactcattctggtggtggtggtttggagactagggcttgcttagaagttcctcaatcc
agtggaagccatgtacattctaatgcaaatgtgaagaaagggaatggaaagctggtcaag
gtggaaaccttaaaggactcaacatcccatgcttccctaggcagtcaggatgctgaggta
gaggaggaaagcacctatgcaatgtccgaagaagaattggctgccttagctgcagccgag
gcggcccatgctgctgctcgtgcagctgctgaggcatatgcatcagcagaagccaagagc
aacacagcgttgcagcttccaaagataccttcatttcacaaatttgcaagacgggaacag
tatgcacaaatggaggactatgatattagaaaaaactggtctggtggtatcctgggaaaa
caagattgtgcatcagagatagactcaaggaactgtagggtccgggactggtctgttgat
ttctctgctacttgtgttaatcttaatagttcaaggatatcagtggataacttatctcag
cagagccattcaaatgagattgcatgccatatgaatttcagagaacagtctggagaaaca
gcagctgtggacagcagtctttttactagagcatgggttgatactgccggtaatgagggg
ataaaggactatcatgccattgagagatggcaatctcaagcagctgctgctgaatcaaat
tttttccacccagctacgcatataaaggatgaagaggattcaaacacatgttcaagacca
ccaacctggaagaatgatgggcgattgaatgagagctcaatctcacaggttccattaaac
aaggaaccacaaaaaaatcatctccgaggtgctgatcgtattaaacaggctgttgtggat
tttgttgcatcactgttgatgcctgtttataaggcacgaaaaattgacagagaaggatac
aaatcaataatgaagaaaactgcaactaaggtcatggagcaggctactgatactgaaaaa
acaatggctgtttctgagtttcttgatttcaaacgcaagaacaagattcgtgcctttgtg
gacaaattgattgagaggcacatggcaatgaagccagctgtgaaaccttcatag
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