Manihot esculenta (cassava): 110626590
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Entry
110626590 CDS
T05761
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110626590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mesc04131
]
110626590
Membrane trafficking [BR:
mesc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
110626590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
WD40
Mcl1_mid
CENP-B_dimeris
Vps39_2
zf-RING_2
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
110626590
NCBI-ProteinID:
XP_021628285
LinkDB
All DBs
Position
11:32105469..32115447
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AA seq
947 aa
AA seq
DB search
MAPIPSENGVDGDDEREEDEEEEEEEEEEEAEEEEEEPRLKYQRMGGSIPTLLSNDAASC
IAVAERMIALGTLDGTVHILDFLGNQVKEFAAHTAAVNDLSFDIEGEYVGSCSDDGSVVI
HSLFTDEKMKFDYHRPMKAIALDPEYSRKTSRRFVAGGLAGHLYFNSKKWLGYRDQVLHS
GEGPIHAVKWRTSLIAWANDAGVKVYDAANDQRITFIERPRGSPRPELLLPHLVWQDDTL
LVIGWGTSVKIASIRTNEYKGTNGTYKHIPAASMNKVDIVASFQTSYYISGIAPFGDSLV
VLAYIPGEDGEKEFSNSIPSRQGNAQRPEVRVVTWNNDELATDALPVHGFEHYKAKDYSL
AHSPFSGSSYAGGQWAAGDEPLYYVVSPKDVVIAKPRDAEDHIAWLLQHGWHEKALAAAE
AGQARSELLDEVGSRYLDHLIVERKYSEAASLCPKLLQGSASAWERWVFHFAHLRQLPVL
VPYIPTENPRLRDTAYEVALVALATNSSFHKDLLSTVKSWPPVIYSALPVISAIEPQLNT
SSMTDALKEALAELYVINGQYEKACSLYADLMKPDMFEFIEKHNLHDAIREKVVQLMMLD
CKRAVPLFIQNKDLIPPAEVVSQLLAARNKCNARYFLHLYLHSLFEANSHAGKEFHDMQV
ELYADYDPKMLLPFLRSSQHYTLEKAYDICVKRDLLREQVFILGRMGNSKKALAIIINKL
GDIEEAVEFVTMQHDDELWDELIKQCLHKPEMVGVLLEHTVGNLDPLYIVNMVPNGMEIP
RLRDCLVKIITDYRTETSLRHGCNDILKADCVNLLVKYYKEARRAVCLTSEGDDARVISD
SSRDSQSTERTLSIKTMDVKSKTRGDSRCCMCFDPFSIQNVSVIVFFCCHAYHMTCLMDS
MHTVSSQKGSRENNEYEEEDEEEEDDDDDTRSGVPRLRCILCTTAAS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggctcctattccgtcggagaacggcgtcgacggagatgacgagcgggaagaggacgaa
gaagaggaagaagaagaagaggaggaagaagcagaagaggaggaagaagaacctaggctt
aagtatcagagaatgggaggtagcatacctacgcttctatccaatgatgcggcgtcgtgt
attgcggtggcggaacgcatgatcgcgctcgggacacttgacggcaccgttcacattctt
gatttccttggcaaccaggttaaggaatttgctgctcatactgctgcagtcaatgaccta
agctttgatatagaaggtgaatatgtaggaagctgttcagatgatgggtctgttgtaata
catagccttttcactgatgagaaaatgaagttcgattatcatcgtccaatgaaggctatt
gctttggaccctgaatattctagaaaaacgtctagaagatttgtagctggtggtttggca
ggtcatttgtatttcaattcaaagaaatggctgggctatcgagaccaggttttgcactct
ggtgaaggtccgatacatgctgtaaagtggagaacaagtctcattgcatgggctaatgat
gcaggtgtgaaagtttatgatgctgccaatgatcagcgaataacattcatcgaaagacca
cgaggaagtccacgtcctgagcttttgctccctcacttagtttggcaggacgataccctc
ttggttattggctggggaacatctgtgaaaattgcatcaataagaacaaatgagtataaa
ggaaccaatgggacatataagcacattccagcagctagtatgaacaaggtggatattgtg
gcatcttttcaaaccagctattatatttcaggaattgctccttttggtgattctttggtt
gttctagcttatattcctggagaggatggagagaaggaatttagcaacagtattccatcg
agacagggcaatgcacagagaccagaagtacgtgtagttacatggaacaatgatgaactg
gcaacagatgccctacctgtgcatggatttgagcattacaaggcaaaggactattccctt
gctcattctcctttctcaggtagcagctatgctggtggtcagtgggctgctggggatgaa
ccattgtattacgttgtatctccaaaggatgtggttattgcaaaaccaagggatgctgaa
gatcacattgcatggcttctacagcatggttggcatgaaaaagctttagcagctgctgaa
gcaggtcaggcgcgaagtgaactacttgatgaggtgggatctaggtatcttgatcatttg
attgtggaaaggaaatattccgaagctgcatctttgtgtcccaaattgttacaaggatct
gcatcagcatgggaaaggtgggttttccattttgcgcatcttcgtcagcttcctgtattg
gttccatatataccaacagaaaacccaagactgcgcgatactgcttacgaggttgcactt
gtagcactggcaacaaattcatcttttcataaggatcttttatcaactgttaaatcttgg
ccacctgtgatttattctgccttacctgtcatttctgctatagaacctcagttaaacacc
tcttccatgactgatgcactcaaagaggcactagcagagttatatgtaattaatggacaa
tatgagaaagcttgttcactttatgctgatcttatgaaaccggatatgtttgaattcatt
gaaaaacacaatttacatgatgcgattcgtgaaaaggttgtccaattgatgatgctagat
tgcaagcgtgctgttcctttatttatccaaaacaaggacttaattcctccagctgaagtt
gtctcacaactgctggctgccagaaataagtgcaatgcgagatatttcttgcatttatat
ctgcattcactatttgaggcaaattcacatgctggaaaggagtttcatgatatgcaggta
gaactttatgcagattatgatccaaaaatgctacttccttttcttcgtagcagccaacat
tacacacttgagaaggcatatgacatttgtgtcaaaagagatcttttgagggagcaagtc
ttcatacttggaagaatgggaaactcaaaaaaggccttagccatcatcataaacaaatta
ggagatatcgaagaggctgtagaatttgtaactatgcagcatgatgatgaactttgggat
gaattgattaagcagtgtcttcacaaacctgaaatggtaggagtcttgttggagcatact
gttggcaatctcgaccccctgtatattgtaaatatggtacctaatggcatggaaattcct
cggcttagggattgcctagtcaaaattatcactgattacagaactgaaacatcccttaga
catgggtgcaatgatattcttaaggctgattgtgtgaacctcttggtaaaatactacaag
gaagcgagacgggcagtttgcttaactagtgaaggagatgatgcgcgagtgattagtgat
agcagtagggattctcagtcaactgagagaacattgagcataaaaactatggatgtcaag
tcaaaaacaaggggagattcaagatgttgcatgtgttttgatcccttctctatacaaaat
gtttcggtcattgtattcttttgttgtcatgcttatcacatgacttgtttaatggattcc
atgcatactgtcagcagccaaaaagggagtcgagaaaacaatgaatatgaagaagaagat
gaagaagaagaagatgatgatgatgatactcgatctggtgttcctcgattgcgttgcatc
ttgtgtactactgctgccagttga
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