Manihot esculenta (cassava): 110630026
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Entry
110630026 CDS
T05761
Name
(RefSeq) polypyrimidine tract-binding protein homolog 1 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110630026
Spliceosome [BR:
mesc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
110630026
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_8
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
110630026
NCBI-ProteinID:
XP_021633016
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All DBs
Position
1:complement(29402582..29410649)
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AA seq
468 aa
AA seq
DB search
MSTSGQPQFRYTQTPSKVLHLRNLPWECTEEELIELCKPFGKIVNTKCNVGANRNQAFVE
FADLNQAIQMVSYYASSSEPAQVRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVE
AGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFTDAETASSARVALDGRSIPRYLL
PEHVGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLPVNPTAIEGPVQPVVGPDGKKKEP
ESNVLLASIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGGTQALIQYPDIATAAVAKE
TLEGHCIYDGGYCKLHLSYSRHTDLNVKAYSEKSRDYTIPDASLLAGGQVSAPTAWQNPQ
AGPMYPMNNYAAGPTQVPAGQVPAWDPAVQAGGPVYASAPGTFPGQTYSAPPVPTYVTAA
MPVGSSPLSQSSTISPGVASMPMTQTGIQPNLRPGGAPPVGQPPYYGR
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacctcggggcagcctcaatttcgatacacacaaaccccatcgaaggttttgcat
ctgcggaatcttccatgggagtgcacggaggaggagctgattgagctctgtaaacccttc
gggaagattgtcaacactaagtgcaatgttggtgccaatcggaatcaagcttttgtcgaa
ttcgcagacttaaatcaggcaattcaaatggtctcttactatgcttcatcatctgagcct
gcacaggttcgtggtaagacagtgtatattcaatactcaaacaggcatgaaattgtcaac
aacaaaagtccaggtgatgttcctggaaatgttttgctggtaacaatcgagggagttgaa
gctggtgatgtgagcattgatgtcatccacttggtattttctgcttttggctttgtgcat
aaaattgctacttttgaaaaggctgctggtttccaggcacttattcaattcactgatgcg
gagactgcatcttctgcaagggttgccttggatgggagaagtatcccaaggtacttgctt
ccagagcatgttggctcatgtcacttgcgcatttcatattctgcacatacagatcttaat
atcaagtttcaatctcataggagcagggactatacaaacccgtatcttcctgtgaatcct
actgcgattgagggacctgtacagcctgttgtaggtcctgacggaaagaagaaagaacca
gagagtaatgttcttcttgcatcaatagagaatatgcagtatgcagtaacagttgacgtg
cttcacacagtattttctgcatttggtaccgtccaaaagattgccatatttgagaaaaat
ggtggaacacaggcattaattcaataccctgatattgcaactgcagcagtagccaaagaa
actctagaaggacattgcatttatgatggtggctattgtaagcttcatctatcatactct
cgtcatactgatctcaatgtaaaggcctacagtgagaagagcagagattacaccatccca
gatgcaagtttgctagcaggaggacaggtttctgctccaacagcgtggcagaatcctcag
gctggtccaatgtaccccatgaacaactacgctgctggtcccacccaagttcctgctggg
caagtgcctgcttgggatccagctgtgcaggcaggaggaccagtttatgcatcagctcct
ggcacatttcctggtcaaacatattcagcacctccagtacccacatatgtcactgcagca
atgcctgttggatcctctcctctttcacaaagcagcacaatttctcctggtgtggcttcc
atgccaatgacgcagacaggcattcaaccaaatctgcggcctggtggtgctccacccgta
ggtcagcctccttattatggccgatga
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