Aquibium oceanicum: BSQ44_02815
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Entry
BSQ44_02815 CDS
T04603
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
meso
Aquibium oceanicum
Pathway
meso03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
meso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BSQ44_02815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meso03400
]
BSQ44_02815
Enzymes [BR:
meso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BSQ44_02815
DNA repair and recombination proteins [BR:
meso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BSQ44_02815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
APH70429
UniProt:
A0A1L3SLZ4
LinkDB
All DBs
Position
complement(556768..559353)
Genome browser
AA seq
861 aa
AA seq
DB search
MALETYNQKRNFERTSEPKGAAKASKGGNSFVIQKHDATRLHYDFRLEMNGVLVSWAVTR
GPSLVPGEKRLAVQTEDHPLEYGEFEGTIPKGEYGGGTVLLWDRGTWSPTGDLKKGLAKG
HLEFELSGEKLHGRWHLVRMARRGREKRDNWLLIKSDDEFAREEDDPDILEEAPKSVKTG
RDIPEIAEEAPGWSSKSGKLDKKTGKPAAKANTDGKAAAKAKPATSKKEAAEKPAAEDFP
KGSRKAKRPDFVEPQLATLRPEAPAGTRWIHEIKFDGYRLQAQLADGKVRLLTRSGLDWT
EKFGTAVADAFTGLPASEAVIDGELVVEGGGGASDFSALQADLSEGRSDRFVFYAFDLIY
LDGHDLRGAALIDRKERLAKLIANAPQSLRYSDHFEEDGEMILRHACRLSLEGVISKLRD
GKYRSGRGRDWIKSKCSDRQEFVIAGYVPSTTSDTAIGSLVLGHYEGDKLVHAGRVGTGF
SRKVAEDLFRKLDAIRRDRSPFDAPLDAASKRGVKFVEPRLVAEVEFRAWTADGILRHAS
FRGLREDKPPAEIVREQKAASKEKLPRWTVKLTHPDRIYWKDAGVTKEGLAEYYSQAWRF
MAPLVVNRPLALLRCPNGYDGQSFFQKHAWKGMSSNILTVHDPKDKSGQPIVAIDGFDGL
IGLAQGGVLEIHPWQASLHDLERPDQIVMDLDPGDGVEWQAVIEAANEVRERMEAEGFAC
FLKTSGGKGLHVVSPVKPSVGWDELKAFAKGIADSMAGDSPDRFVATVTKSKRRGKILID
YLRNGRGATAVAPYSTRARAGAPVSMPIAWDELSGEIGPAYFTVPNAPARLANLETDPWA
DFRKAEVPLGKSPKRKGKKAA
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgagacatacaatcagaagcgcaacttcgaacggacttccgaaccgaagggt
gccgcgaaggcatcgaagggcggcaacagcttcgtgatccagaagcacgacgccacgcgg
ctgcactacgatttccggctggaaatgaacggcgtgctggtgagctgggccgtgacgcgg
ggtccgagcctcgtgccgggcgaaaagcgtctcgccgtacagaccgaggaccatccgctc
gaatacggcgagttcgaggggacgattccgaagggcgaatatggcggcggcaccgtgctg
ctgtgggaccgcggcacgtggagcccgaccggcgacctgaagaagggcctcgccaagggg
catctcgaattcgaactttcgggcgagaagctgcacgggcgctggcacctggtgcggatg
gcaaggcgcgggcgcgaaaagcgcgacaactggctgctgatcaaaagcgacgatgaattc
gcccgcgaggaggacgatcccgacatcctggaagaggcgccgaaatcggtgaagaccggc
cgcgacattcccgaaatcgccgaggaagcgccgggctggtcgtccaaatccggaaagctc
gacaagaagactggcaagccggcggcgaaggcgaataccgacgggaaggcggccgcaaag
gcgaagccggctaccagcaagaaggaagcggccgaaaagcccgccgcggaggatttcccg
aaaggcagccgcaaggcgaagcggccggatttcgtcgaaccgcaactcgcgacgctgcgg
cccgaggcgccggccgggacgcgctggatccacgagatcaagttcgacggctatcgcctg
caggcgcagctcgccgacggcaaggtcaggctgctgacgcgcagcggcctggactggacc
gagaagttcggtaccgcggtggcggatgctttcacgggcctgccggcgtcggaggccgtc
atcgacggggaactcgtggtggaaggcggcggcggcgcttcggatttttccgcgctccag
gccgacctgtcggaaggccgctccgaccgcttcgtgttttatgccttcgacctcatctac
ctcgacggacatgacctgcgcggggccgcgctgatcgaccgcaaggagaggctggcgaag
ctgatcgccaacgcgccgcagagcctgcgctacagcgaccacttcgaggaggacggcgag
atgatcctgcgccacgcctgccggctcagcctggaaggcgtgatctcgaaacttcgcgac
ggaaaataccgctccggccgcggccgggactggatcaagtcgaaatgctcggaccgacag
gaattcgtgatcgcgggctacgtgccgtcgacaacgtccgacaccgcgatcggctcgctg
gtgctcgggcattacgagggcgacaagctcgtgcatgcggggcgcgtcggcacgggcttc
tcgcgcaaggtggccgaagacctattccgcaagctggacgcgatccggcgggacaggtca
ccgttcgatgcgcctctcgacgcggcgtccaagcggggcgtgaagttcgtcgagccgcgg
ctcgtcgcggaggtcgagttccgggcctggaccgccgacggcattttgcgccatgcctcg
ttccgcggcctgcgcgaggacaagccgccggcggagatcgtgcgcgaacagaaggcggct
tccaaggaaaagctgccgcgctggacggtgaagctcacgcatcccgaccgcatctactgg
aaggatgccggcgtgacgaaggaagggctggcggaatattacagccaggcctggcggttc
atggcgccgctggtggtcaaccggccgctggcgctgctgcgctgcccgaacggctatgac
gggcagagcttcttccagaagcatgcctggaaggggatgagttcgaacatcctcaccgtc
cacgacccgaaggacaagtccggccagccgatcgtggcgatcgacgggttcgacgggctg
atcgggctagcgcagggcggcgtgctcgaaatccatccgtggcaggcctcgctgcatgac
ctcgaacgccccgaccagatcgtcatggatctcgatccgggcgacggcgtggaatggcag
gcggtgatcgaggcggcgaacgaggtgcgggagcgcatggaggcggaaggatttgcgtgc
ttccttaagacgtcgggaggcaagggcctgcacgtggtgagccccgtcaagccctccgtc
ggatgggacgagctgaaggcgttcgcgaaggggatcgccgattccatggcgggcgacagc
ccggaccgcttcgtggccaccgtgaccaagtcgaagcggcgcggcaagatcctgatcgac
tacctgcgcaacgggcggggagcgaccgcggtggcgccctactccacccgcgcacgcgcc
ggcgcgccggtgtcgatgccgatcgcctgggatgaactttccggagagatcgggccggcc
tacttcaccgtgcccaacgcgccggcgcggctcgccaacctggagaccgatccgtgggcg
gatttccggaaggcggaagtgccactcggcaagagcccgaagcgcaagggcaagaaagcg
gcctga
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