Mesorhizobium sp. WSM1497: A9K65_015260
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Entry
A9K65_015260 CDS
T04915
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mesw
Mesorhizobium sp. WSM1497
Pathway
mesw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mesw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A9K65_015260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesw03400
]
A9K65_015260
Enzymes [BR:
mesw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A9K65_015260
DNA repair and recombination proteins [BR:
mesw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A9K65_015260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DUF3471
Motif
Other DBs
NCBI-ProteinID:
ARP64574
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All DBs
Position
3155216..3157708
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AA seq
830 aa
AA seq
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MTTPPKLKAYRAKREFAKTPEPVGGLVSSDGNRFVVHKHHATADHYDLRLQVGDVLKSWA
VPRGPSLNPADKRLAVETEDHPLEYIDFEGVIPEGEYGGGPMIVWDTGSWAPMDDVEKSL
RTGAFKFRLAGDKLNGGWMLTRLKPKPGEDENKKNWLLFKERDLAADTALDILTARPESV
KSGLRIEELAAPAKPAAKPAPRQGSLKPGTLPGAFKAPMLARIEPQLATQVPKPPDGEDT
KQVWLHEIKFDGYRTMAHLTEGAVKLITRGGIDWTKRYGDLPHAFAKLPCRDSIIDGEIV
VLDARGISRFALLQDALAGGVGSKLHFYAFDLLHLDGWDLTKAPLVRRKALLAQMLSGLG
ANSAIQFSDHVEGSGQGLYDQASELGLEGVVSKRATAIYQSGRSKSWTKTKALLSDDFVI
AGFTISDAAEGLAALGMAEFEGGELHYRGKVGTGFDAATAGELLARLEPLREGATAPEGV
PREIMREMNWVRPLLSARIHYANRTADNALRHGVFRGLRDVGLSTPVSSTRKRLIAEADL
ATIWVTNPTRRLFGKTGPTKLDIAVYYALVGDFMLPHILGRPVSLVRCPTGLPKDCFFQR
HAFTGMPPSVVTFEATNSEGETKSYLSVEGAKGYLALAQFGVVEFHTWGTHRASLDRPDQ
IVLDLDPGEGIDWREVVEAAVHIKDELERLGLVPFAKTSGGSGIHITVPVTGKQNWKKLH
QATSAIATHLATTAPDTFTTTMGKDNRKKRIFIDYHRNARGHTSAAPYSLRARTNLPAST
PVSWSDLESIDAPQDLNYSSLPGLLATSGDPWAEIDKFARDLPVVSGATK
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgacgactccaccaaagctcaaagcctatcgcgccaaacgcgaattcgccaagacgccg
gaaccggttggcgggctcgtcagcagcgacggtaaccgcttcgtcgtgcacaagcaccac
gccaccgcagaccattatgatctgcgactgcaggtcggcgatgtcttgaagagctgggcg
gtgccgcgcgggccttcgctcaatccggccgacaaaaggctggcggtcgagaccgaggat
catccgctcgaatatatcgacttcgagggtgtcattcccgaaggcgagtatggcggcggg
ccgatgatcgtctgggacaccggcagctgggcgccgatggacgatgtcgaaaagagcttg
cgcaccggcgccttcaagttccggctggccggcgacaagctcaatggcggctggatgctg
acccggctgaaaccgaaacccggcgaggacgaaaacaagaagaactggctgctgttcaaa
gagcgcgacctcgcggccgacactgcgcttgacatcctcacggcccggccggagagcgtc
aaatccggattgcgcatcgaggagctggcggcgccggcaaagcccgccgccaaacccgcg
cccagacagggatcgctgaagcccggcacgctgccgggcgccttcaaggcccccatgctt
gcccgtatcgagccgcagctggcgacgcaggtgccaaaaccgcccgatggcgaagacacc
aaacaagtctggctgcacgagatcaaattcgacggctaccgcaccatggcgcatctcact
gagggcgcggtcaagctgatcacccgtggcggcatcgactggacgaagcgttatggcgac
ctgccgcatgcgttcgccaaactgccgtgccgcgactccatcatcgatggcgagatcgtg
gtgctcgacgcccggggcatcagccgtttcgcgctgctgcaggatgcgctggccgggggc
gtcggcagcaagctccatttctacgccttcgatcttctccatctcgacggctgggacctg
accaaggcgccgctggtccggcgcaaggcgctgctcgcgcagatgctgtcgggcctcggc
gccaattccgccatccagttctccgaccatgtcgagggctcggggcaggggctctacgac
caggcgtcggaactggggctggagggtgtcgtctccaagcgcgccacggccatctatcag
agcggccgaagcaaaagctggaccaagaccaaggcgctgctgtcggacgacttcgtcatc
gccggcttcaccatctccgatgcggccgaagggctggcggcgctcggcatggcagagttc
gagggcggtgaattgcattatcgcggcaaggtcggcaccggtttcgatgccgccacagcc
ggtgaattgctcgccaggctggagccgctgcgggaaggcgccaccgcgcccgagggcgtt
ccgcgcgagatcatgcgcgagatgaactgggtgcggccgctgctgtcggcgcgcatccac
tacgccaaccgcacagcggacaacgcactgcgccacggcgtcttccgcggtttgagggat
gtcggcctgtcgacgccggtatcctcgacacgcaagcggctgatcgccgaggctgacctt
gccaccatctgggtgaccaacccgacgcgccggctgttcggcaagaccggcccgaccaag
ctcgacatcgccgtctattacgcgctggtcggcgatttcatgctgccgcacattctcggc
cggccggtgtcgctggtgcgctgcccgaccggcctgccgaaggattgcttcttccagcgc
cacgccttcaccggcatgccgccctcggtggtgacattcgaggcgacaaattccgagggc
gaaaccaaatcctatctctcggtcgaaggcgcgaaagggtatctggcgctggcgcagttc
ggcgtcgtcgagttccacacctggggcacccaccgcgccagcctcgacagacccgaccag
atcgtcctcgacctcgatccgggagaagggatcgactggcgcgaggtggtcgaggccgcg
gtgcacatcaaggacgaattggagcgcctggggctggtgccgttcgccaagacctccggc
ggcagcggcatccacatcacggtgcctgtgacaggcaagcagaactggaagaaactgcac
caggcaaccagcgcgatcgccacgcatctggcgacaacggcgcctgatactttcaccacc
accatgggcaaggacaaccgcaagaagcgcatcttcatcgactaccaccgcaatgcgcgc
ggccacacctccgcagcaccttactctttgcgcgcccgcaccaatctgccggcctcgacg
ccggtcagctggagcgacctcgaatccatcgatgcgccgcaggatctgaattattcgtcg
ctgccggggctgttggcgacgtcgggcgatccgtgggcggagattgataagtttgcgcgg
gatctgccggtggtctcgggggcgacgaagtag
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