Methanobacterium sp. MB1: MBMB1_0159
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Entry
MBMB1_0159 CDS
T02957
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
meth
Methanobacterium sp. MB1
Pathway
meth03030
DNA replication
meth03410
Base excision repair
meth03420
Nucleotide excision repair
meth03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
meth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MBMB1_0159 (lig)
03410 Base excision repair
MBMB1_0159 (lig)
03420 Nucleotide excision repair
MBMB1_0159 (lig)
03430 Mismatch repair
MBMB1_0159 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
meth03032
]
MBMB1_0159 (lig)
03400 DNA repair and recombination proteins [BR:
meth03400
]
MBMB1_0159 (lig)
Enzymes [BR:
meth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MBMB1_0159 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
MBMB1_0159 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MBMB1_0159 (lig)
DNA replication proteins [BR:
meth03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MBMB1_0159 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MBMB1_0159 (lig)
DNA repair and recombination proteins [BR:
meth03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MBMB1_0159 (lig)
NER (nucleotide excision repair)
Other NER factors
MBMB1_0159 (lig)
MMR (mismatch excision repair)
Other MMR factors
MBMB1_0159 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CDG64278
UniProt:
U6EB73
LinkDB
All DBs
Position
160712..162385
Genome browser
AA seq
557 aa
AA seq
DB search
MLYKDLVEVYQALESTTKRLEKTDILSNFLAKVGEEEAELIPIVTLLSVGRIFPTWSEEE
LGIGSKLLMKAISQAVGVSPGEVENQVRDAGDIGLASEELYQKKSQVTLFSRPLTIKKVH
SNLVKMAEVSGNRAQFKKIDLLMELLSSASPSEAKYLTRTVLEELRVGVGEGTIRDAISQ
AFNISTEVTERAYMLTNDMGLVSFVAFTEGEEGLKKLTLKPGKPVKPMLAQLSPGIKESV
EEMGWAICETKYDGIRVQIHRHDDKIDIFTRRLENISLALPEITEYLEKSLPHEDFIVEG
EIIASRDGKPISFQYMLQRVRRKYDIDKMVSKIPLTIYLFDVLYYQRPTLDEPLKERRNI
LESIVKVEKGRVELSAQVNVHPDEIHLAQNLFEVSIKQGHEGIMIKDPHAPYMPGIRGKK
MLKLKAEPETLDLVVIGGTYGKGKRAHLIGSYLMAIRDENDQLKPLVYAATGLDDKTLLE
LSEMVEPLIESKDGRQVKITPSIIMEIAFSEIVESPESEVGYSLRFPVVKRIRNDIGLDE
IDTLDRIKSIFKNSEKS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgttatataaagatttagtggaggtctatcaggctttggaatcaaccaccaaacgtctg
gagaaaacagatattttatccaattttctggctaaagtgggagaggaagaagcggaactt
attcctatagtaaccttactatctgtgggtagaattttccccacatggagtgaggaagaa
ttagggatagggtcaaaacttttgatgaaagctatttctcaagcagtaggtgtttctcct
ggtgaggtggaaaaccaggtgcgtgatgcaggggatataggacttgcatctgaggaacta
taccagaagaaaagtcaggtaaccctcttcagccggccgctgaccataaagaaagtgcac
agcaatctagtgaaaatggcggaggtttctggaaacagggcccagtttaaaaaaatagac
cttttaatggaattattatcatcagcctcaccttcagaggctaagtacctcacccgcacc
gtactagaagaactacgagtaggtgtaggggaagggaccatccgtgatgctatttctcaa
gcctttaacatctccactgaagtaactgaaagagcctacatgttaaccaatgatatgggc
ttggtatctttcgtggccttcacagaaggggaggaaggacttaaaaaattaactttaaaa
cctggaaaaccagttaaaccgatgctggcccagttatcccctggtattaaggaaagtgtg
gaagaaatgggatgggccatctgtgaaaccaaatatgatggtataagagttcaaattcac
cgacacgatgataaaatagatatattcacccgaagactggaaaatatcagtttagccctt
ccagaaatcacagaataccttgaaaaatccttacctcatgaagattttattgttgaggga
gaaattattgccagcagggatggaaagccaatatcattccagtacatgcttcagagggta
cgaaggaaatacgacatcgataagatggtctccaaaattcccttaaccatatatctgttt
gatgtactctactatcaacgacctactctggatgaacctctcaaggagaggaggaatata
ctggaatcaatagttaaggtggaaaaaggtagggtagaactttcagcccaagttaatgtt
catcctgatgagattcacctggcccagaatctctttgaagtttccattaaacaaggtcac
gagggcatcatgatcaaagaccctcatgccccatacatgccgggtataaggggtaaaaag
atgcttaaattaaaagccgaaccagaaaccctggatctagtggtgattggaggcacttat
ggtaagggtaaacgtgcccatttaattgggtcctacctgatggccattagggatgaaaat
gaccaactcaaacccctggtctatgctgccacaggattggatgataaaaccttattggaa
ctttcagaaatggtagaaccacttattgaaagtaaagacggtagacaggtgaagataact
ccttctataatcatggaaattgcctttagtgaaatagtggaaagtccagaatccgaagtt
ggctactcactgcgtttcccagtggttaaaaggatccgtaatgatattggtctggatgaa
attgacaccctggatagaattaaatctatcttcaaaaactcagagaaaagttaa
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