KEGG   Methyloversatilis sp. RAC08: BSY238_3543Help
Entry
BSY238_3543       CDS       T04449                                 

Definition
(GenBank) DNA ligase, ATP-dependent, family
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
metr  Methyloversatilis sp. RAC08
Pathway
metr03030  DNA replication
metr03410  Base excision repair
metr03420  Nucleotide excision repair
metr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:metr00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    BSY238_3543
   03410 Base excision repair
    BSY238_3543
   03420 Nucleotide excision repair
    BSY238_3543
   03430 Mismatch repair
    BSY238_3543
Enzymes [BR:metr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BSY238_3543
    6.5.1.6  DNA ligase (ATP or NAD+)
     BSY238_3543
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     BSY238_3543
DNA replication proteins [BR:metr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    BSY238_3543
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     BSY238_3543
DNA repair and recombination proteins [BR:metr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     BSY238_3543
   NER (nucleotide excision repair)
    Other NER factors
     BSY238_3543
   MMR (mismatch exicision repair)
    Other MMR factors
     BSY238_3543
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AOF80675
UniProt: A0A1B3LIJ3
LinkDB All DBs
Position
3858993..3860816
Genome map
AA seq 607 aa AA seqDB search
MPNDPAVPVGERGAQGLAVELRAQRRDGAALRVEVAEPLHRCAIKAASPGYDGPMQRFAA
LYLSLDSSTSTRHRVQAMQDYFAQVPAEDAAWAVYFLAGGKPRQAVGTRVLRETGARAAG
MPDWLFDECYEAVGDLAETLALILPPPRAVTDLPLHHWVGVLGALRASPPDEKPDLLNDA
WQVLGSGERFLFNKLITGALRVGVSRLLVTRALAAFAQVPAELVAQRLIGYLAADPARTG
MGAARFVALVAPAGDDEIGMQPYPFFLAHPLQTSPGDALGDAADWMAEWKWDGIRAQLVR
RAGAVALWSRGEELISERFPELIEAAAALPDGCVLDGEVLAWRADAPLPFAQLQTRITRK
RLTRRLLDDVPAVFMAYDLIECDDADLRAQPQSIRRARLEGLLAGRATPVLRQSPLLRGD
WPTLAAERDCAREHGVEGLMLKRADAPYGIGRTKLDPRGQWWKWKIDPYTIDAVLIYAQR
GHGRRAGLYSDYTFAVWSVAADGTRALVPFAKAYSGLSDAEMREVDAYIRSHTIERFGPV
CSVTPELVFELGFEGIQPSPRHKSGIAVRFPRMLRRRLDKPAAEADTIDALRALIGSPTA
AQGVKSG
NT seq 1824 nt NT seq  +upstreamnt  +downstreamnt
atgcccaacgatcccgctgtgcccgtcggcgagcgcggcgcgcagggcctcgcggtcgaa
ctgcgcgcgcagcggcgggatggtgcggcactgcgggtcgaagtggccgaaccgctgcac
cggtgcgccatcaaagcggcgtcccccggttacgatggcccgatgcagcgattcgccgcc
ctttacctgtcgctcgacagcagcacctcgacccgccatcgcgtgcaggcgatgcaggac
tatttcgcgcaggtgccggcggaagacgccgcgtgggcggtgtacttcctggccggcggc
aagccgcgtcaggcggtgggcacgcgcgtgctgcgcgaaaccggcgcgcgagccgccggt
atgccggactggttgttcgacgaatgctacgaggcggtcggcgatctggcggaaacgctg
gcgctcatcctgccgccaccgcgagccgtcaccgaccttccgctgcaccactgggtcggc
gtgctgggtgcgttgcgcgcctcaccccccgacgaaaagcccgacctcttgaacgacgcc
tggcaggtgctgggcagcggcgagcgcttcctgttcaacaagctgattaccggcgcgctg
cgcgtcggcgtgtcgcgcctgctggtcacacgggcgctggcggcgtttgcacaggtgccg
gccgaacttgtcgcacagcgtctgatcggctatctggcggccgacccggcgcgcaccggc
atgggtgcggcgcgctttgtcgcgctggtcgcacccgccggcgacgacgaaatcggcatg
cagccctaccccttcttcctcgcccatccgctgcagacgagccccggcgacgcgctgggc
gatgccgccgactggatggcagagtggaaatgggacggcatccgcgcccagctggtgcgc
cgtgccggcgcagtcgcgctgtggtcgcgtggcgaagagctgatcagcgagcgctttccg
gagctgatcgaagctgctgctgcgctgcccgacggctgcgtgctcgacggcgaagtgctc
gcctggcgcgccgacgcaccgctgccattcgcgcagctgcagacccgaatcacccgcaag
cggctcacgcggcgcctgctcgacgacgtgccggcggtattcatggcgtacgacctcatc
gaatgcgacgatgctgacctgcgcgcgcagccgcagtcgatccggcgcgcgcggcttgaa
ggtctgctggccggcagggcaacgccggtgctgcgccagtcgccgctgttgcgcggtgac
tggcccacgctggccgccgagcgcgattgcgcccgcgagcacggcgtcgagggcctgatg
ctcaagcgcgccgacgcgccttacggcatcggccgcaccaagctcgacccgcgtggccag
tggtggaaatggaagatcgacccctacacgatcgacgccgtgctgatctacgcccagcgc
ggccacggccgacgcgcagggctgtacagcgattacaccttcgcggtctggtcggtcgcg
gccgacggcacgcgcgcgctggtgccgttcgccaaggcgtattccggcctgtcggacgcc
gaaatgcgcgaagtcgacgcctacatccgcagccacacgatcgaacgcttcggcccggtc
tgttcggtcacgcccgaactggtgttcgaactgggtttcgagggcatacagccttcgccg
cgccacaagtccggcatcgccgtacgcttcccgcgcatgctgaggcggcgactggacaag
ccggccgcagaggcggatacgatcgatgcgctgcgcgcgctgatcgggtcccccacggct
gcgcaaggtgtcaagtcaggctga

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