Methylorubrum extorquens PA1: Mext_0009
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Entry
Mext_0009 CDS
T00640
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mex
Methylorubrum extorquens PA1
Pathway
mex03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mex00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Mext_0009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mex03400
]
Mext_0009
Enzymes [BR:
mex01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Mext_0009
DNA repair and recombination proteins [BR:
mex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Mext_0009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
Helicase_RecD
HHH_2
AAA_22
AAA_29
HHH_3
nSTAND3
AAA_16
PIF1
UvrD-helicase
TrwB_AAD_bind
DEAD
NTPase_1
MeaB
AAA
T2SSE
AAA_28
HHH
CbiA
Motif
Other DBs
NCBI-ProteinID:
ABY28438
LinkDB
All DBs
Position
8303..10504
Genome browser
AA seq
733 aa
AA seq
DB search
MNTSVRPSDLDCGTPLDMLAGSVERVTFHSAETGFCVLKIHARGRRDLVPVVGHAPAIAA
GEWLTASGRWVTDREHGLQFRADTLQVTPPTGIEGIERYLASGQMRGIGPMMAKRIVACF
GEAVFEIIEAEPARLTEVEGIGRKRAARIVKGWAEQKAVREIMIFLHAHGVGTARATRIF
RTYGGDSLKVMAEDPYRLARDIRGIGFRTADAIALRLGLARDAPQRLAAGVSYALQTAMD
EGHCGLPVERLVRLAAELLDVAPDLVRLAAALVLREGREVVADTLRGEPCLFLKGLHGAE
RVIAMRLAERAAGLPPWAAIDFALARPWVEAKTGKTLSASQAEAVGLVLRSKLCVLTGGP
GVGKTSTLDAILRILTAKGVRVLLAAPTGRAAKRMAEQTGLEARTLHRLLEIDPRNGGFQ
RNEDNPLDCDLLVIDETSMVDVPLMHALLKAVPERAGLILVGDVDQLPSVGPGQVLADVI
ASGTVPVARLTEIFRQAAQSRIVVNAHSINTGRMPAAPAKGEDSDFYLVEIEDADEGVET
LIELVTRRIPRRFGLDPTRDIQVLTPMIRGSLGSRNLNNALQRVLNPSPSAEVERFGWRF
APGDRVMETRNDYDRDVFNGDLGTISAIDAEDEALVVDFDGRAVIYPFNELDTLVPAFAT
TIHKAQGSEYPAVVIPVVTQHRTMLARNLLYTGVTRGRRLVVLIGQRRALAMAVREGTSR
RRWTKLREWLDAA
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgaacacctcagtccgtcccagcgacctcgattgcggtacgcccctcgacatgctcgcc
ggctcggttgagcgggtgacgttccacagcgccgagaccggcttctgcgtcctcaaaatc
catgcccgcggccggcgcgacctcgtgccggtggtgggtcacgccccggccatcgccgcg
ggcgagtggctgacggcctccgggcgatgggtcacggaccgtgagcacggcctccagttc
cgcgccgacacgctccaagtgacgccgcccacggggatcgaaggcatcgagcgctacctc
gcgtccgggcagatgcgcggcatcggcccgatgatggccaagcgcatcgtcgcctgcttc
ggcgaggcggtgttcgagatcatcgaggccgagcccgcccgcctcaccgaggtcgagggc
atcggccgcaagcgcgccgcgcgcatcgtcaagggctgggccgagcagaaggccgtgcgg
gagatcatgatcttcctgcacgcccacggcgtcggcaccgcgcgggcgacccggatcttc
cgcacgtatggcggggattccctgaaggtcatggccgaggatccctatcggctcgcccgc
gacatccgcggcatcggcttccgcacggcggacgccatcgccctgcgccttggcctcgcc
cgcgacgcgccgcagcggctcgctgccggtgtctcctacgcactccagacggcgatggat
gagggccattgcggcctgcccgtcgagcggctggtgcgcctcgctgccgagcttctcgac
gtcgcgcccgatctcgtccggctcgccgcggcgctcgtcctgcgcgagggccgcgaggtc
gtcgcggatacgctgcgcggcgagccctgcctgttcctgaagggcctgcacggcgccgag
cgcgtcatcgcgatgcggctggccgagcgcgccgccggcctgccaccctgggccgcgatc
gacttcgcgctggccaggccctgggtcgaggcgaagaccggaaagacgctgtccgcctcg
caggccgaggcggtcgggctggtgctccgttcgaagctctgcgttctcaccggcggcccc
ggcgtcggcaagaccagcaccctcgacgcgatcctgcgcatcctcaccgccaagggcgtg
cgggtgctgctcgccgcccccaccggccgggcggccaagcgcatggccgagcagaccggg
ctggaagcacgcacgctccatcggctgctggagatcgacccgcgcaatggcggctttcag
cgcaacgaggacaacccgctcgattgcgatctcctcgtcatcgacgagacctcgatggtt
gacgtgccgctgatgcatgccctcctcaaagccgtgccggagcgagcgggcctgatcctc
gtcggcgatgtcgaccagcttccctcggtcggacccggacaggtgctcgccgacgtgatt
gcctccggaaccgtgccggtggcgcgccttaccgagatttttcgccaagcggcgcagagc
cggatcgtcgtcaacgcccacagcatcaacaccgggcggatgccggctgcgcccgccaag
ggcgaggacagcgacttctacctcgtcgagatcgaggacgcggacgagggcgtggagacg
ctgatcgaactcgtcacccgccgtatcccccgccgcttcggcctcgatcccacccgcgac
atccaagtgttgacgccgatgatccgcggctcgctcggcagccgcaatctcaacaacgcc
cttcagcgcgtgttgaatccgtcgccctcggcggaggtcgaacgcttcggctggcgcttt
gcgcccggcgaccgggtgatggagacccgcaacgactacgaccgcgacgtgttcaacggc
gacctcggtacgatcagcgccatcgacgcggaggacgaggcgctcgtggtcgatttcgac
ggtcgcgcggtgatctacccgttcaacgaactcgacacgttggtcccggccttcgccacg
acgatccacaaggcgcaaggctcggaatatccggctgtggtgatcccggtggtgacccag
catcgcacgatgctcgcgcgcaacctgctctataccggcgtcacccgcgggcgccgcctc
gttgtgctgatcggccagcgccgggcccttgcgatggcggtccgcgaagggacctcgcgg
cggcgttggaccaagctgcgggagtggctggacgcggcctga
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