KEGG   Methanobrevibacter sp. YE315: TL18_01390
Entry
TL18_01390        CDS       T04279                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
meye  Methanobrevibacter sp. YE315
Pathway
meye03030  DNA replication
meye03410  Base excision repair
meye03420  Nucleotide excision repair
meye03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:meye00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TL18_01390
   03410 Base excision repair
    TL18_01390
   03420 Nucleotide excision repair
    TL18_01390
   03430 Mismatch repair
    TL18_01390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:meye03032]
    TL18_01390
   03400 DNA repair and recombination proteins [BR:meye03400]
    TL18_01390
Enzymes [BR:meye01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TL18_01390
    6.5.1.6  DNA ligase (ATP or NAD+)
     TL18_01390
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TL18_01390
DNA replication proteins [BR:meye03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TL18_01390
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TL18_01390
DNA repair and recombination proteins [BR:meye03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TL18_01390
   NER (nucleotide excision repair)
    Other NER factors
     TL18_01390
   MMR (mismatch excision repair)
    Other MMR factors
     TL18_01390
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AMD16812
UniProt: A0A125RAS2
LinkDB
Position
complement(337418..339076)
AA seq 552 aa
MKYQELVDVYSALEATTKRLEKTEIIAEYLKKLDSDTIEKVGLLILGAVFPAWSSEEIGI
GGKLVERAVAEAVGTTPSTVEDAVRDEGDIGLACVKLYAKKSQMTFFSQPLTIDFVFNSL
RKLSTISGSRSTNRKIAILLELLSQASATEAKYLTRTITEELRIGVGDGVVRDAIAQAFD
IDKAIVERAQMLTNDFSVVARTAKEEGSAGLEKLNLTPGTPVKPMLAQLAPPLNEIIPEM
GMAICDTKYDGIRLQVHRSGDEINIFTRRLENITHALPEIVELFDEHLPHEDYIVEGEVI
ATRNGKPLPFQNILHRVRRKYNVEEAMENVPLKLYLFDVLYYKVPMIDEPLKTRREVLEE
IVDVSVDEMNLSNMIIGTEDNIPEIQELFETSIQEGHEGIMIKDSTAPYIPGLRGKKMLK
FKAEPETLDMVVIGGTYGKGKRGDFVGSYLVALRDENDDFKSVAYAATGLDDATLEYLTG
KMKEIEISTKGKEIIVEPKIVLEIAFSEIVESPEYETGYSLRFPVVKNIRKDKGPMDADT
VERLISMYNTGN
NT seq 1659 nt   +upstreamnt  +downstreamnt
atgaaataccaagaattagtagatgtctactcagctttagaggcaactacaaaaagacta
gagaaaactgaaataatagcggaatacctgaaaaaattggattcagataccattgaaaaa
gtaggacttctaattttaggtgccgtatttccagcttggagttcagaagaaattggaatt
ggcggaaaattagtggaaagagcagttgcagaagctgttggaactacaccctccacagtt
gaagatgcagttcgtgatgaaggagatattgggctagcatgcgtcaaattatatgctaaa
aaatcccaaatgacctttttctcacagcctttaacaatcgactttgtcttcaatagcttg
cgcaaattatccacaatcagcggttcaagatccaccaatcgtaaaatagcaatcttatta
gagttattaagtcaggcaagtgcaacagaagccaaatacttaacccgtaccattactgaa
gaattaagaatcggtgtaggggacggagtggtccgggatgcaatagcacaggcatttgac
attgataaggccattgttgaaagagcacaaatgcttacaaacgatttttcagtggttgca
agaaccgcaaaagaagaaggtagtgcaggtttagaaaaacttaatctaacccccggaaca
cctgtcaagccaatgctggcgcagcttgcacccccattgaatgagattattcctgaaatg
ggtatggcaatctgtgatacaaaatatgacggcatcaggctgcaggttcatagaagcggt
gatgaaatcaacatatttacccgcaggctcgaaaacatcacacatgcccttccagaaatc
gttgagctatttgatgagcatttacctcatgaggactatattgtggaaggtgaagtgata
gctacaagaaacggcaagcccctgcctttccaaaacatattgcatcgtgtcagaagaaaa
tacaatgttgaagaagcaatggaaaatgtcccattaaaattatacttatttgacgtgctt
tactataaagttccaatgattgacgaacctttaaaaacaagaagggaagtgttggaagaa
attgttgacgtttctgtcgatgaaatgaatctaagcaacatgattattggaacagaagac
aacatccccgaaatccaagagttgttcgaaacatcaatacaggaaggtcatgaaggaata
atgataaaggattccaccgcaccatatattcctggacttagaggcaaaaaaatgcttaaa
ttcaaagcggaacctgaaaccttagatatggttgtcattggaggaacctacggtaaaggt
aaaagaggagactttgtcgggtcatacctagtggctttaagggatgaaaatgatgatttt
aaaagtgtggcttatgccgcaacaggtcttgatgatgccactttagaatatctgaccggg
aaaatgaaagaaattgaaatctcaacaaagggaaaggaaattattgtcgagccaaaaata
gtcctggaaatcgcattttcagaaatcgtcgaatctcctgaatatgaaaccggatactcc
ttgagattccctgttgttaaaaatataagaaaagataaaggtccgatggatgcggacact
gttgagaggttaatttccatgtacaatactggaaattaa

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