Methanocella conradii: Mtc_2230
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Entry
Mtc_2230 CDS
T01774
Symbol
lig1
Name
(GenBank) DNA ligase I, ATP-dependent (dnl1)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mez
Methanocella conradii
Pathway
mez03030
DNA replication
mez03410
Base excision repair
mez03420
Nucleotide excision repair
mez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Mtc_2230 (lig1)
03410 Base excision repair
Mtc_2230 (lig1)
03420 Nucleotide excision repair
Mtc_2230 (lig1)
03430 Mismatch repair
Mtc_2230 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mez03032
]
Mtc_2230 (lig1)
03400 DNA repair and recombination proteins [BR:
mez03400
]
Mtc_2230 (lig1)
Enzymes [BR:
mez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mtc_2230 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
Mtc_2230 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Mtc_2230 (lig1)
DNA replication proteins [BR:
mez03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Mtc_2230 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Mtc_2230 (lig1)
DNA repair and recombination proteins [BR:
mez03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Mtc_2230 (lig1)
NER (nucleotide excision repair)
Other NER factors
Mtc_2230 (lig1)
MMR (mismatch excision repair)
Other MMR factors
Mtc_2230 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DNA_ligase_OB_2
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFD00965
UniProt:
H8IA05
LinkDB
All DBs
Position
complement(2118000..2119751)
Genome browser
AA seq
583 aa
AA seq
DB search
MQNNSNGIMLFKELVEVFEKLKKTQSRLEKTAIIADFIKNVPPDEMPVVVTFLIGRVFPL
WDERKIGIAGQTIIKVISSITYNSESKVIESYKRTGHLGITAEEMFQRRRQAMFFEADEL
TVMDVNRTFAEIARQAGAGSAAKKQKLLIGLLHRATPKEAEYIVSLAIEYVLSGAKEGVM
EEAIAKAFGVDVELVRRANMLTSDLGETARVAMLEGERGLKGISIRPMRPVRPMLAQNVA
SIQEALEVLGGRADFETKYDGARLQVHKLGDQVRLYSRRLENLTEALPEIVRYVKQSVKA
DSVILDCECIATDPKTGRPVPFQNILTRLRRIYKVEETEKLFPLFLRPFDILYVNGESMI
DLPFIERRRILEQNIMPVDEKCKPATALITDKVEEAQELFDESIKRGNEGLMAKDLQATY
TPGVRGRKMVKIKEVLDTLDLAIVSAEWGHGRKAGWLTSFEVAAYDEENDRYLVLGKVAS
GFSDEQLQEMTERLKPLIHAERGRVVDVKPDVIVEVKFQEIQKSPIYSSGYALRFPRLVR
VRDDMSPEEVNTIGRVLNIYDISHGKPARHVGPQPDGCGDNPA
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcagaataatagcaatggtatcatgctattcaaagagttggtcgaggtcttcgagaag
ctcaagaagacgcagagcaggctggagaagacggctattatcgcggatttcataaaaaac
gtgccgcctgatgagatgcccgtcgtcgtcacatttcttataggaagggtgttccctcta
tgggacgagcgaaagatagggatagctggacagacgataataaaggtcatatcatccata
acgtataactcggagagcaaagtgatagagagctataagcggaccggccatctgggcatt
actgccgaggagatgttccagaggcgcaggcaggccatgttcttcgaagcggatgagctc
acggtaatggacgttaaccgtacttttgccgagattgcgaggcaggccggagcgggctcg
gcggctaaaaaacaaaagctgctcatcgggctgctgcatagggcaacgccgaaggaggcc
gaatacatcgtaagcctggccatagagtacgtcctctcgggcgccaaggaaggcgtcatg
gaggaggcgatagcgaaggcgtttggcgtggacgtcgagctggtcaggagggccaacatg
ctcacgagcgacctgggggagaccgcaagggtggcgatgcttgagggcgagcgggggcta
aagggcataagcataaggcccatgcgcccggtgaggccgatgctggcgcagaacgtggcc
agcatccaggaagccctcgaagtcctgggcggcagggcggacttcgagaccaagtacgat
ggggcgcgccttcaggtacataagctcggcgaccaggtgcggctttatagcaggcgcctt
gagaaccttacggaagccctcccagaaatagtgaggtacgtgaagcagagcgttaaggcc
gattccgtgatcctcgactgcgagtgcatagccaccgaccctaagaccggccgtccggtg
cccttccagaacatcctcacgaggcttcggcgcatctacaaggtcgaggagactgagaag
ctgttcccgttgttcttaaggccgttcgacatcttgtacgtgaacggggagagcatgata
gacttgcctttcatagaaaggcggcgcatcctcgagcagaacatcatgcccgtagacgag
aagtgcaagcccgctaccgctttgattacggacaaagtggaagaggctcaggagcttttc
gacgagtccataaagcgtggcaacgagggcctcatggcaaaggacctccaggcgacgtat
actccgggcgtccggggcaggaagatggtcaagataaaagaggtgcttgatacgctggac
ctggccatcgtctctgcggagtggggccacgggcgaaaggcgggctggctgacctcgttc
gaggtcgcagcctatgatgaggaaaatgaccgctacctcgtgcttggcaaggtggccagc
ggcttctctgatgagcagcttcaggagatgaccgagcgccttaagcccctgatccacgcg
gagcgtgggcgtgtcgtggacgtgaagcccgacgtcatcgtagaggttaagttccaggaa
atccaaaaaagccccatatattccagcggctatgcgttgcgtttccccaggctggttcgc
gttcgtgacgacatgagccctgaggaggttaatacgataggccgtgtccttaatatctat
gatatttcccatggtaagcccgctcgacatgtgggcccccagcctgacggttgtggcgat
aatcctgcgtga
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