Methanobacterium formicicum BRM9: BRM9_2137 Help Entry BRM9_2137         CDS       T03396                                  Symbol dnl1 Name (GenBank) ATP-dependent DNA ligase DnlI   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism mfc  Methanobacterium formicicum BRM9 Pathway mfc03030   DNA replication mfc03410   Base excision repair mfc03420   Nucleotide excision repair mfc03430   Mismatch repair Brite KEGG Orthology (KO) [BR:mfc00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     BRM9_2137 (dnl1)    03410 Base excision repair     BRM9_2137 (dnl1)    03420 Nucleotide excision repair     BRM9_2137 (dnl1)    03430 Mismatch repair     BRM9_2137 (dnl1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:mfc03032]     BRM9_2137 (dnl1)    03400 DNA repair and recombination proteins [BR:mfc03400]     BRM9_2137 (dnl1) Enzymes [BR:mfc01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      BRM9_2137 (dnl1)     6.5.1.6  DNA ligase (ATP or NAD+)      BRM9_2137 (dnl1)     6.5.1.7  DNA ligase (ATP, ADP or GTP)      BRM9_2137 (dnl1) DNA replication proteins [BR:mfc03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     BRM9_2137 (dnl1)  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      BRM9_2137 (dnl1) DNA repair and recombination proteins [BR:mfc03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      BRM9_2137 (dnl1)    NER (nucleotide excision repair)     Other NER factors      BRM9_2137 (dnl1)    MMR (mismatch excision repair)     Other MMR factors      BRM9_2137 (dnl1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-ProteinID:  AIS32939 UniProt:  A0A089ZVS4 LinkDB All DBs Position complement(2193940..2195613) Genome browser AA seq 557 aa AA seqDB search MLYEDLVEVYQDLDSTTKRLEKTDILANFLAKVGEEEPELIPMVTLLSLGRIFPTWSEEE LGIGSKLLMKAISKAVGVSPGEVENQMRDAGDIGLAAEELYQKKSQVTLFSRPLTIKKVH RNLVKMAEVSGNRAQFKKIDLLMELLSSASPSEAKYLTRTVLEELRVGVGEGTIRDAISQ AFNIPTEVAERAHMLTNDMGLVASVAWKEGEEGLKKLTLKPGKPVKPMLAQLSPGIKESV EEMGWALCETKYDGIRVQIHRHGGKIDIFTRRLENISLALPEITQYIEKSLPHEDFIVEG EIIASRDGKPISFQYMLQRVRRKYEIDKMVSKIPLTIYLFDVLYYHQPTLDEPLQERRKI LESLVKVENDRVELSAQVKVHPEEIHLAQDLFEISIEQGHEGIMIKDPQAPYMPGIRGKK MLKLKAEPETLDLVVIGGTYGKGKRAHLIGSYLMAIRDEDDKLKPLAYAATGLDDKTLLE LLKMVEPLIESKDGRQVKIAPSIIMEIAFSEIVESPESEVGYSLRFPVVKRIRNDIGLDE IDTLERIKSIFKNSEKS NT seq 1674 nt NT seq  +upstreamnt  +downstreamnt atgttatatgaagatttagtggaggtctaccaggatctggactctaccaccaaacgtctg gagaaaacagatatcttggccaattttctggctaaagtgggagaagaagaaccggaactc atccccatggtaactttactgtccctgggcagaattttccccacctggagtgaggaagaa ctggggatagggtcgaaacttctgatgaaggccatttctaaggcagttggtgtttctccc ggtgaggtggaaaatcagatgcgtgatgccggggatattggcctggccgctgaggagtta taccagaagaaaagtcaggtgacccttttcagccgaccactgaccataaagaaggtacac cgtaatctggtgaaaatggcggaagtttctggaaaccgggcccagtttaagaagatagac cttttaatggaattattatcatcggcgtcaccttcagaggctaagtacctcacccgcacc gtgctggaggaactacgggtaggtgtgggggagggaaccatccgtgacgccatttcccaa gcctttaacatccctactgaagtagccgaaagggcgcacatgttaaccaacgacatggga ttggtggcttctgtggcctggaaagaaggggaagaaggactgaaaaaattaactttaaaa cctggaaaaccagttaaacccatgctggcccagttatccccgggtattaaggaaagtgtg gaggaaatggggtgggcactctgtgaaaccaaatatgacggcataagggttcaaatccac aggcacggtggtaagatcgacattttcaccagaagactggaaaatatcagcctggccctt ccagaaatcacacaatacattgaaaaatccctcccccacgaagattttattgttgaggga gaaattattgccagtagggatggaaaaccaatatcattccagtacatgcttcagagggta cgaaggaaatatgaaatcgataaaatggtctctaaaatcccgttaaccatctatctgttt gatgtactctattaccaccagcccactctggatgaacctcttcaggagaggagaaaaata ctcgaatcactggttaaagtggaaaatgaccgggtagagctttcggcccaggttaaagtc catcctgaagagattcacctggcccaggatctctttgaaatttccattgaacagggtcat gagggcatcatgatcaaggacccccaggcaccctacatgccgggtataagggggaagaag atgcttaaattaaaagccgaaccagaaaccctggatttggtggtgattgggggcacttat ggtaagggtaaacgtgcccatttaattggctcctacctgatggccattcgggatgaggat gacaaactcaaacctctggcctatgctgccacgggactggacgataaaaccttactggaa cttttaaaaatggtagaaccactcatcgaaagcaaagatggtagacaggtgaagatagct ccctctataatcatggagattgcctttagtgagatagtggaaagtccggaatctgaggtt ggctactctctacgtttcccggtggttaaaaggatccgcaatgatattggtttggatgaa attgacaccctggaaagaattaaatccatcttcaaaaactcagagaaaagttaa

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