KEGG   Methanocaldococcus fervens: Mefer_0746
Entry
Mefer_0746        CDS       T00976                                 
Name
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mfe  Methanocaldococcus fervens
Pathway
mfe03030  DNA replication
mfe03410  Base excision repair
mfe03420  Nucleotide excision repair
mfe03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Mefer_0746
   03410 Base excision repair
    Mefer_0746
   03420 Nucleotide excision repair
    Mefer_0746
   03430 Mismatch repair
    Mefer_0746
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfe03032]
    Mefer_0746
   03400 DNA repair and recombination proteins [BR:mfe03400]
    Mefer_0746
Enzymes [BR:mfe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mefer_0746
    6.5.1.6  DNA ligase (ATP or NAD+)
     Mefer_0746
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Mefer_0746
DNA replication proteins [BR:mfe03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Mefer_0746
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Mefer_0746
DNA repair and recombination proteins [BR:mfe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Mefer_0746
   NER (nucleotide excision repair)
    Other NER factors
     Mefer_0746
   MMR (mismatch excision repair)
    Other MMR factors
     Mefer_0746
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase DUF2071
Other DBs
NCBI-ProteinID: ACV24564
UniProt: C7P7N2
LinkDB
Position
694207..695928
AA seq 573 aa
MLWKEVCEIFNKIEKTTKRLEKRDYFIKLIDMAKEKGKPEDLKKICYMAIGRVYPEYDER
ELGVGEKLLINAVTSIGINKDELLEKIKETGDIGLAIEQLKSKIKQAYLFFQPLTVDEVY
ETLRRVGEIEGEGSQKKKLRLISSLFLRASPIECRYLARLILEDMRIGMNVPTILDTLSL
YFNVPREKLEKIYAITNDIGLLAEKLLKGDLESDELRLKLFRPIKPMLAQLAPSIEEALL
EMGRAQFETKYDGARVQIHKEGNKVRIYSRRLEDVTNALPEIVEAVKKIDVERLIVEGEC
VAIDKETGKPRPFQDILRRFRRKYDIGKMMKEINLRVYLFDILYKDGISFIDEEFGNRRK
VLEEIIGYENDWRTEKERIEKELKSDKIIDISYKLVTNDAKEAREFYNWSLSIGHEGVMI
KNLKAPYTPGSRVRTMYKFKPTLESLDVVITKAKRGMGKRKDWYGSFEIAVRDEEGNLYP
IGHVGTGLTESDLEMLKEEIDKIIIRDLGEEVEVEPKIVVEVAYEEIQKSDKYPCGYALR
FPRVVRFRFDKGKDDINTIEDVKRIYEIQRSRK
NT seq 1722 nt   +upstreamnt  +downstreamnt
atgctttggaaagaggtttgtgagatatttaacaaaattgaaaaaaccacgaaaagattg
gaaaagagggactattttataaaattaattgatatggctaaggagaaaggtaagccggag
gatttaaaaaagatttgctatatggcgataggaagagtttatcctgaatacgatgaaaga
gagctcggagttggagaaaaactcctaataaatgcagttacctccattggaattaacaag
gatgaattattggaaaaaattaaagagacaggagatattgggttagctatagaacagtta
aaatcaaaaattaaacaggcatatctattctttcaacccctaacagtagatgaagtttat
gaaactttgaggagagttggagaaatagagggggagggctctcaaaagaaaaagttgagg
ttgataagcagtttatttttaagggcttcaccaatagagtgtagatatttggcaaggcta
atactggaagatatgaggataggaatgaacgttccaaccatattagatacattatcatta
tatttcaacgtcccaagggagaaattggagaagatatatgcaataaccaacgatattggt
cttttagctgaaaagttgctaaaaggagatttggaaagtgatgagttgagattaaaatta
tttagaccaataaagccaatgttggctcaattagctccttcaattgaagaggcattattg
gagatgggtagggcacaatttgaaacaaaatacgatggggctagagtgcagatacataaa
gagggcaataaggttagaatttacagtagaaggttagaggatgttacaaatgcacttcca
gagattgttgaggcagttaaaaaaattgacgttgaaaggttgattgttgaaggggagtgt
gtggctatagataaagaaactggaaagccaaggccgtttcaggatatattaagaaggttt
agaaggaagtatgatattggaaaaatgatgaaagaaataaacttaagggtttatttgttt
gatatcctttacaaagatggtatatcatttatagatgaggaatttggaaatagaaggaaa
gttttagaggaaattattggttatgagaatgattggagaactgaaaaagagaggatagag
aaggagcttaaatcagataaaataatagacatatcttataaattagttacaaacgatgca
aaagaggcaagagaattttacaattggtctctatccattggacacgagggagttatgatt
aaaaacttgaaagccccttacactccaggaagtagggttagaacgatgtataaattcaag
ccaactcttgagagtttagatgttgtcataacaaaggcaaagagagggatggggaagaga
aaagattggtatgggtcatttgagatagctgttagagatgaagaaggaaatctctatccc
atagggcatgttggaactggattaactgaaagcgatttagagatgttgaaggaggagatt
gataagataataattagagatttaggagaagaggttgaagtagagccaaagatagttgtt
gaagttgcctatgaagagattcaaaaatctgataaatatccttgtggctatgctttaaga
ttcccaagggttgtaaggtttagatttgataaagggaaggatgatataaacaccatagaa
gatgttaagaggatttatgagattcaaaggagtagaaaataa

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