KEGG   Pseudoduganella flava: GO485_28045
Entry
GO485_28045       CDS       T06346                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mfla  Pseudoduganella flava
Pathway
mfla03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mfla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GO485_28045 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mfla03400]
    GO485_28045 (ligD)
Enzymes [BR:mfla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GO485_28045 (ligD)
DNA repair and recombination proteins [BR:mfla03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GO485_28045 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QGZ42504
UniProt: A0A562PHD6
LinkDB
Position
6499280..6501946
AA seq 888 aa
MKDSLKLYKAKRNFAITPEPAEGGEEGTEALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDSHDKRMAVHVEDHPISYNDFEGVIPEKQYGAGKVIIWDKGTWHPIGDPRKGYR
DGNLKFELRGHKMHGRWVLVRMRRSGEKQEPWLLIKENDEYVRAADEFSVVDEMPDSVKA
LGMPTGERLTPAADEAESTALAHQGKPARKKAAGSAAKGAATSTAKPAKSAKTAVAKPGA
KAKMPATLSPELATLVDAPPPDPADWIFELKFDGYRLLARVEGGNIGLWTRNGNDWTHKL
EPLRAAIEKMRLPDGWYDGEIVVHDQNGKPNFGLLQQAFDGSRTKNIVYFVFDAPYLDGH
DLRDVPLAQRRELLKTVLDAKGNDTVRFSAELDAPPAEIVAAACRMGLEGIIGKRRDATY
VSRRSGDWIKLKCALRQEFVIGGYTDPQGSRVGIGSLLLGYYDDAGKLHYAGNVGAGFNE
KSLRDITAKLHKLASDTNPFAPTKAIEKKAHWVKPTLVAEVTFGEWTGSGSIRHSVFQGL
RKDKKAASIRREQAAHVEDVMQTQSTTKAAPVRGKAKAKAKADPVAESDVGSKLPASLKV
TNPDRLIDPASGMTKIGLVRYYALVADLMLEHLKGRPVALVRAPAGVGGELFFQKHSEVG
KLPGVKQLPQELDPDHPTMLEVATTQGLLSCAQWNVVELHTQNAFARTYDKPNRMIFDLD
PGQGVTWERIQEAAQLMRAFLEELGLPTFLKTSGGKGLHVVVPVKPQHDWDTVKGFSKLI
VEHMARTLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTVCAWSARTRPGLGISVPVAWDE
LPHLKGGDQWTVATVHTRLDHGNAPWADYAKSAVSITKAMKQMGYTGA
NT seq 2667 nt   +upstreamnt  +downstreamnt
atgaaagactccctgaaactctacaaggccaagcgcaatttcgcgatcacgcccgagcct
gccgaaggcggcgaggagggtaccgaagcgctgacgttcgtgatccagaagcactgggcc
acgcggctgcactacgacttccgcctggagctggacggcacgatgaaaagctgggccgtg
ccgaaaggccccagctacgacagccacgacaagcgcatggccgtgcacgtggaggatcat
ccgatctcgtacaacgacttcgaaggcgtgatccccgagaagcagtacggcgccggcaag
gtgatcatctgggacaagggcacgtggcacccgatcggcgacccgcgcaagggctaccgc
gacggcaacctgaagttcgagctgcgcggtcacaagatgcacggccgctgggtgctggtg
cgcatgaggcgctccggcgagaagcaggaaccgtggctcctgatcaaggagaacgacgaa
tacgtgcgcgccgccgacgagttctccgtcgtcgacgagatgcccgacagcgtgaaggcg
ctcggcatgccgaccggcgaacggctgacgcccgcggccgacgaggccgagagcacggcg
ctggcgcaccagggcaagccggcgcgcaagaaggcggcgggcagcgctgcgaagggtgcc
gcaacgagcacggccaagcccgccaagtctgcgaagactgctgtcgccaagccgggcgcg
aaggcgaagatgccggccacgctgtcgcccgagctggcgacgctggtcgatgcgccgccg
cccgatcccgccgactggatcttcgaactgaagttcgacggctaccggctgctggcccgc
gtcgaaggcggcaacattggcctgtggacgcgtaacggcaacgactggacgcacaagctc
gaaccgctgcgcgcggcgatcgagaagatgcggctgcctgacggctggtacgacggcgag
atcgtcgtgcacgaccagaacggcaagccgaacttcggcctgctgcagcaggcgttcgac
ggctcccggacgaagaacatcgtttacttcgtgttcgacgcgccttacctcgacggccac
gacctgcgcgacgtgccgctggcacagcgccgcgagctgttgaagacggtgttggacgcg
aagggcaacgacacggtgcgcttctcggccgagctggatgcgccgcccgccgagatcgtc
gcggcggcatgccgcatgggcctggaaggcatcatcggcaagcgccgcgacgccacctac
gtatcgcgccgctcgggcgactggatcaagctgaagtgcgcgctgcggcaggagttcgtc
atcggcggctatacggatccgcagggctcgcgcgtgggcatcggctcgctgctgctgggc
tattatgacgacgccggcaagctgcattacgccggcaacgtcggcgccgggttcaacgag
aagtcgctgcgcgacatcacggcgaagctgcacaagctggccagcgacacgaacccgttc
gcgccgaccaaggcgatcgagaagaaggcacattgggtcaagcccacgctggtggccgag
gtgacgttcggcgaatggaccggcagcggctcgatccgccattccgtattccagggcctg
cgcaaggacaagaaggcggccagcatccgccgcgagcaggccgcccacgtggaggacgtc
atgcagacacagagcacaacgaaggcagcacccgtgcgcggcaaggccaaggccaaggcc
aaggccgacccggtggccgaatcggacgtcggcagcaagctgcccgcgtcgctgaaggtg
acgaacccggaccggctgatcgaccccgccagcggcatgacgaagatcggcctggtgcgc
tactacgcgctggtggccgacctgatgctggaacacctgaagggccggccggtggcgctg
gtgcgggcgccggccggtgtcggcggcgagctgttcttccagaagcactcggaggtcggc
aagctgcccggcgtgaagcagctgccgcaggaactcgacccggatcacccgacgatgctg
gaagtggcgaccacgcagggcctgctgtcgtgcgcgcagtggaacgtcgtcgagctgcac
acgcagaacgcgtttgcccgcacttacgacaagccgaaccggatgattttcgacctggac
ccggggcagggcgtgacgtgggaacgcatccaggaagcggcgcagctgatgcgcgcgttc
ctcgaggagctgggcctgccgacgttcctgaagacgagcggcggcaaggggctgcacgtc
gtcgtacccgtgaagccgcagcacgactgggatacggtgaaaggcttctcgaagctgatc
gtcgagcacatggcgcgcacattaccggaccgcttcgcgttcaagagcggcccgaagaac
cgcgtcggcaagatcttcatcgactatctgcgcaacggccgcggcgccaccaccgtatgc
gcgtggtcggcgcggacccgtccgggtttgggcatctcggtgcccgtcgcctgggacgag
ctgccgcacctgaagggcggcgaccagtggaccgtggccaccgtccacacgcggctcgac
catggcaacgcgccatgggccgattatgcgaagagcgccgtcagtatcacgaaggcgatg
aagcagatggggtatacgggggcttga

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