Pseudoduganella flava: GO485_28045
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Entry
GO485_28045 CDS
T06346
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mfla
Pseudoduganella flava
Pathway
mfla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mfla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GO485_28045 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfla03400
]
GO485_28045 (ligD)
Enzymes [BR:
mfla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GO485_28045 (ligD)
DNA repair and recombination proteins [BR:
mfla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GO485_28045 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QGZ42504
UniProt:
A0A562PHD6
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All DBs
Position
6499280..6501946
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AA seq
888 aa
AA seq
DB search
MKDSLKLYKAKRNFAITPEPAEGGEEGTEALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSYDSHDKRMAVHVEDHPISYNDFEGVIPEKQYGAGKVIIWDKGTWHPIGDPRKGYR
DGNLKFELRGHKMHGRWVLVRMRRSGEKQEPWLLIKENDEYVRAADEFSVVDEMPDSVKA
LGMPTGERLTPAADEAESTALAHQGKPARKKAAGSAAKGAATSTAKPAKSAKTAVAKPGA
KAKMPATLSPELATLVDAPPPDPADWIFELKFDGYRLLARVEGGNIGLWTRNGNDWTHKL
EPLRAAIEKMRLPDGWYDGEIVVHDQNGKPNFGLLQQAFDGSRTKNIVYFVFDAPYLDGH
DLRDVPLAQRRELLKTVLDAKGNDTVRFSAELDAPPAEIVAAACRMGLEGIIGKRRDATY
VSRRSGDWIKLKCALRQEFVIGGYTDPQGSRVGIGSLLLGYYDDAGKLHYAGNVGAGFNE
KSLRDITAKLHKLASDTNPFAPTKAIEKKAHWVKPTLVAEVTFGEWTGSGSIRHSVFQGL
RKDKKAASIRREQAAHVEDVMQTQSTTKAAPVRGKAKAKAKADPVAESDVGSKLPASLKV
TNPDRLIDPASGMTKIGLVRYYALVADLMLEHLKGRPVALVRAPAGVGGELFFQKHSEVG
KLPGVKQLPQELDPDHPTMLEVATTQGLLSCAQWNVVELHTQNAFARTYDKPNRMIFDLD
PGQGVTWERIQEAAQLMRAFLEELGLPTFLKTSGGKGLHVVVPVKPQHDWDTVKGFSKLI
VEHMARTLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTVCAWSARTRPGLGISVPVAWDE
LPHLKGGDQWTVATVHTRLDHGNAPWADYAKSAVSITKAMKQMGYTGA
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgaaagactccctgaaactctacaaggccaagcgcaatttcgcgatcacgcccgagcct
gccgaaggcggcgaggagggtaccgaagcgctgacgttcgtgatccagaagcactgggcc
acgcggctgcactacgacttccgcctggagctggacggcacgatgaaaagctgggccgtg
ccgaaaggccccagctacgacagccacgacaagcgcatggccgtgcacgtggaggatcat
ccgatctcgtacaacgacttcgaaggcgtgatccccgagaagcagtacggcgccggcaag
gtgatcatctgggacaagggcacgtggcacccgatcggcgacccgcgcaagggctaccgc
gacggcaacctgaagttcgagctgcgcggtcacaagatgcacggccgctgggtgctggtg
cgcatgaggcgctccggcgagaagcaggaaccgtggctcctgatcaaggagaacgacgaa
tacgtgcgcgccgccgacgagttctccgtcgtcgacgagatgcccgacagcgtgaaggcg
ctcggcatgccgaccggcgaacggctgacgcccgcggccgacgaggccgagagcacggcg
ctggcgcaccagggcaagccggcgcgcaagaaggcggcgggcagcgctgcgaagggtgcc
gcaacgagcacggccaagcccgccaagtctgcgaagactgctgtcgccaagccgggcgcg
aaggcgaagatgccggccacgctgtcgcccgagctggcgacgctggtcgatgcgccgccg
cccgatcccgccgactggatcttcgaactgaagttcgacggctaccggctgctggcccgc
gtcgaaggcggcaacattggcctgtggacgcgtaacggcaacgactggacgcacaagctc
gaaccgctgcgcgcggcgatcgagaagatgcggctgcctgacggctggtacgacggcgag
atcgtcgtgcacgaccagaacggcaagccgaacttcggcctgctgcagcaggcgttcgac
ggctcccggacgaagaacatcgtttacttcgtgttcgacgcgccttacctcgacggccac
gacctgcgcgacgtgccgctggcacagcgccgcgagctgttgaagacggtgttggacgcg
aagggcaacgacacggtgcgcttctcggccgagctggatgcgccgcccgccgagatcgtc
gcggcggcatgccgcatgggcctggaaggcatcatcggcaagcgccgcgacgccacctac
gtatcgcgccgctcgggcgactggatcaagctgaagtgcgcgctgcggcaggagttcgtc
atcggcggctatacggatccgcagggctcgcgcgtgggcatcggctcgctgctgctgggc
tattatgacgacgccggcaagctgcattacgccggcaacgtcggcgccgggttcaacgag
aagtcgctgcgcgacatcacggcgaagctgcacaagctggccagcgacacgaacccgttc
gcgccgaccaaggcgatcgagaagaaggcacattgggtcaagcccacgctggtggccgag
gtgacgttcggcgaatggaccggcagcggctcgatccgccattccgtattccagggcctg
cgcaaggacaagaaggcggccagcatccgccgcgagcaggccgcccacgtggaggacgtc
atgcagacacagagcacaacgaaggcagcacccgtgcgcggcaaggccaaggccaaggcc
aaggccgacccggtggccgaatcggacgtcggcagcaagctgcccgcgtcgctgaaggtg
acgaacccggaccggctgatcgaccccgccagcggcatgacgaagatcggcctggtgcgc
tactacgcgctggtggccgacctgatgctggaacacctgaagggccggccggtggcgctg
gtgcgggcgccggccggtgtcggcggcgagctgttcttccagaagcactcggaggtcggc
aagctgcccggcgtgaagcagctgccgcaggaactcgacccggatcacccgacgatgctg
gaagtggcgaccacgcagggcctgctgtcgtgcgcgcagtggaacgtcgtcgagctgcac
acgcagaacgcgtttgcccgcacttacgacaagccgaaccggatgattttcgacctggac
ccggggcagggcgtgacgtgggaacgcatccaggaagcggcgcagctgatgcgcgcgttc
ctcgaggagctgggcctgccgacgttcctgaagacgagcggcggcaaggggctgcacgtc
gtcgtacccgtgaagccgcagcacgactgggatacggtgaaaggcttctcgaagctgatc
gtcgagcacatggcgcgcacattaccggaccgcttcgcgttcaagagcggcccgaagaac
cgcgtcggcaagatcttcatcgactatctgcgcaacggccgcggcgccaccaccgtatgc
gcgtggtcggcgcggacccgtccgggtttgggcatctcggtgcccgtcgcctgggacgag
ctgccgcacctgaagggcggcgaccagtggaccgtggccaccgtccacacgcggctcgac
catggcaacgcgccatgggccgattatgcgaagagcgccgtcagtatcacgaaggcgatg
aagcagatggggtatacgggggcttga
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