KEGG   Methanoregula formicica: Metfor_0603
Entry
Metfor_0603       CDS       T02392                                 
Name
(GenBank) ATP-dependent DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mfo  Methanoregula formicica
Pathway
mfo03030  DNA replication
mfo03410  Base excision repair
mfo03420  Nucleotide excision repair
mfo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Metfor_0603
   03410 Base excision repair
    Metfor_0603
   03420 Nucleotide excision repair
    Metfor_0603
   03430 Mismatch repair
    Metfor_0603
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfo03032]
    Metfor_0603
   03400 DNA repair and recombination proteins [BR:mfo03400]
    Metfor_0603
Enzymes [BR:mfo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Metfor_0603
    6.5.1.6  DNA ligase (ATP or NAD+)
     Metfor_0603
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Metfor_0603
DNA replication proteins [BR:mfo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Metfor_0603
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Metfor_0603
DNA repair and recombination proteins [BR:mfo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Metfor_0603
   NER (nucleotide excision repair)
    Other NER factors
     Metfor_0603
   MMR (mismatch excision repair)
    Other MMR factors
     Metfor_0603
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: AGB01664
UniProt: L0HF16
LinkDB
Position
complement(596885..598540)
AA seq 551 aa
MRFQDFAQTCGQLEKTSGRLDMIAIISQVLPGLTDEELPVFVRFVMGRIFADWSSRKLGI
GPNLLYEAVGYVAGVKKEQVIDKINATGDVGTAVEELLELKSQTTFFHEDLELVQVYNEL
IAIADTEGKKSQREKGLLVRRLLANALPIEGRYLARIMLEELRIGVGEGSVREAVAKAFG
VDSSLVEHAQQALNDMGEVARLAKTGAAALEDVKITLFHPVRMMLAQAGSIAGMIEEHGE
IAAEFKYDGSRFQFHKKGNWARLYSRRLEDVTAALPDVIGQLMGATDHDVILDGEVIAIK
DGRPMPFQSVLRRFRRRHDVAEAQEKIEMVPNVFDILYLDGETLIDLPFSERRKKLESVM
KMSIAPQTVSSSQEIIEKTYNDALAAGHEGIMIKVPSSPYTPGQRGKNWIKIKPEVDTLD
LAVIGAEWGEGKRAHVFGSFLVACQNQGKLLPLSRVATGFSDEQLAEVYDLLKDTVERKA
GKEVTFEPTLVFEVGYAELQASVNYEAGFALRFPRFIRIRDDKDIADIETIESIRARYQR
QVNTAQAYEKN
NT seq 1656 nt   +upstreamnt  +downstreamnt
atgcgcttccaggattttgcacagacctgcgggcagctggagaagacctccggccggctc
gacatgatcgcgatcatcagccaggtgctccccggactgaccgatgaggagctgccggtc
tttgtccggttcgtgatggggcggatcttcgcggactggagcagcaggaagcttggcatc
ggcccgaatcttctgtacgaagcagtcgggtatgttgccggggtgaaaaaggagcaggtg
atcgacaagatcaatgcaaccggcgatgtcggtacggcagtcgaggaactccttgaactc
aagtcccagaccaccttcttccacgaggatctcgaactcgtgcaggtgtacaacgaactg
atagccatcgccgacacggaaggaaagaaatcacagcgggagaaaggacttttggtgcgg
cgcctgctcgcaaatgccctcccgatcgaaggacggtaccttgcccggatcatgctcgaa
gagctgcggatcggcgtaggggagggaagcgtgcgggaggccgtggcaaaagccttcggg
gtcgactcctctcttgtggagcatgcccagcaggcgctcaatgacatgggcgaggtggcc
aggcttgcaaagaccggggccgctgcgctggaggacgtgaagatcacgctcttccatccg
gtacggatgatgcttgctcaagccggatccattgccggcatgatcgaagagcatggcgag
atcgcggcggagttcaagtacgatggctcccgcttccagttccataagaaaggcaactgg
gcccggctctactcacggaggcttgaggacgtgactgcggcgctcccggacgtcatcgga
caactgatgggcgcaaccgaccacgacgtgatcctggacggcgaggttattgcgatcaag
gacggaaggccgatgccgttccagtccgtgctccgcaggttccggcgcaggcacgatgtc
gcagaggcacaggagaagatcgagatggtgccaaacgtcttcgatatcctgtaccttgac
ggagagaccctcattgacctcccgttctccgagcgccggaagaagctggagagtgttatg
aagatgtctatcgccccgcagaccgtcagcagcagtcaggaaatcatcgagaagacgtac
aacgatgcccttgccgcaggccacgaggggatcatgatcaaggtgccgtcatcgccctat
acgccaggccagcggggaaagaactggatcaagatcaagcccgaagtggacacgctcgac
cttgcggtgatcggcgccgagtggggcgaggggaagcgcgcccatgtcttcggctcgttc
cttgttgcctgccagaaccagggaaaacttctccctttaagcagggttgccacgggattc
tcggatgagcagctcgcagaggtgtacgacctcctcaaggacactgttgaacggaaggca
ggaaaagaggtcacgttcgagcccacgctcgtcttcgaagtcggatacgcggaactgcag
gcgagcgtgaattacgaggcagggtttgccctccgcttcccccggtttatccggatccgg
gacgacaaggatatcgctgacatcgagactatcgagagcatccgggcccggtaccagcgg
caggtgaacacggcgcaggcttacgaaaagaattga

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