KEGG   Methanocaldococcus sp. FS406-22: MFS40622_0101
Entry
MFS40622_0101     CDS       T01175                                 
Name
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mfs  Methanocaldococcus sp. FS406-22
Pathway
mfs03030  DNA replication
mfs03410  Base excision repair
mfs03420  Nucleotide excision repair
mfs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MFS40622_0101
   03410 Base excision repair
    MFS40622_0101
   03420 Nucleotide excision repair
    MFS40622_0101
   03430 Mismatch repair
    MFS40622_0101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfs03032]
    MFS40622_0101
   03400 DNA repair and recombination proteins [BR:mfs03400]
    MFS40622_0101
Enzymes [BR:mfs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MFS40622_0101
    6.5.1.6  DNA ligase (ATP or NAD+)
     MFS40622_0101
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MFS40622_0101
DNA replication proteins [BR:mfs03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MFS40622_0101
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MFS40622_0101
DNA repair and recombination proteins [BR:mfs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MFS40622_0101
   NER (nucleotide excision repair)
    Other NER factors
     MFS40622_0101
   MMR (mismatch excision repair)
    Other MMR factors
     MFS40622_0101
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase DUF2071
Other DBs
NCBI-ProteinID: ADC68801
UniProt: D3S6Z1
LinkDB
Position
84214..85935
AA seq 573 aa
MLWKDVCEIFNKIEKTTKRLEKRDYFIKLIDMVKEKGKPEDLKKICYMAIGRVYPEYDER
ELGIGEKLLINAVTSIGINKDELLEKIKETGDIGLAIEQLKSKIKQASLFFQPLTVDEVY
ETLKRVGEIEGEGSQKKKLRLISSLFLRASPIECRYLARLILEDMRIGMNVPTILDSLSV
YFNVPKEKLEKIYAITNDIGLLAEKLLMGDLESEDLKLKLFRPIKPMLAQLTPSIEEALL
EMGRAQFETKYDGARVQIHKDGNKVKIYSRRLEDVTNALPEIVEAVKNINVDKLIVEGEC
VAIDKQTGKPRPFQDILRRFRRKYDIGKMMKEINLRVYLFDILYKDGVSFIDEEFEKRRK
VLEEIVGYENDWRTERERIEKELKSDKIIDISYKLVTNDANEAKEFYNWSLSIGHEGVMI
KNLKAPYTPGSRVRTMYKFKPTLESLDVVITKAKRGMGKRKDWYGSFEICVRDEEGNLYP
IGHVGTGLTEADLEMLKEEIDKIVIRDLGEEVEVEPKIVIEVAYEEIQKSDKYPCGYALR
FPRVVRFRFDKGVNDINTVEDVERIYEIQRGRK
NT seq 1722 nt   +upstreamnt  +downstreamnt
atgctttggaaagatgtatgtgagatatttaataaaattgaaaaaacaacaaaaaggtta
gaaaagagagactattttataaaattaattgacatggttaaagagaaagggaagccagag
gatttaaaaaagatttgttacatggctatagggagagtttatcccgaatacgatgagaga
gagttaggaattggagaaaagcttttaataaatgcagttacttccatagggattaataaa
gatgagttattagagaaaattaaagagacaggagacattgggttggctatagagcaatta
aaatcaaagattaaacaggcatctttgttttttcaaccattgactgttgatgaagtttat
gaaactttaaagagggttggagagatagaaggagaaggttctcaaaagaaaaagttgagg
ttaataagtagtctctttctaagagcctcaccaatagagtgtagatatttagcaaggtta
attttggaagatatgaggataggaatgaatgtcccaactatattagattccctttcagtt
tattttaatgttccaaaggaaaaattggaaaagatatatgcaataaccaatgatattgga
cttttagctgaaaaattattaatgggggatttagaaagtgaggatttaaaattaaaatta
tttagaccaataaaaccaatgttggctcagctaactccttcaattgaagaggcattactg
gagatgggtagggctcaatttgaaacaaagtatgatggagcaagagttcaaatacataag
gatggaaataaagttaagatttatagtaggagattagaggatgtcacaaatgcccttcca
gagattgttgaggcagtaaaaaatattaatgtagataagttaattgttgaaggagagtgt
gtagctatagataaacaaactggaaaaccaagaccatttcaagatatacttagaaggttt
agaagaaagtatgatatcggaaagatgatgaaagaaataaatttaagagtttatctattt
gatattctttataaagatggagtatcgtttatagatgaagagtttgaaaagagaaggaaa
gttttagaggaaattgttggttatgagaacgattggagaactgaaagggaaagaattgaa
aaggagcttaaatcagataaaataattgatatatcctataaattggttacaaacgatgct
aatgaagcaaaggagttttacaactggagtttatccattggacatgagggagttatgatt
aaaaatttaaaagctccttacaccccagggagtagggttagaactatgtataaatttaaa
ccaacgttggagagtttggatgttgttataacaaaggcaaaaagagggatggggaaaaga
aaggactggtatggttcatttgaaatatgtgttagagatgaggaaggcaatctctaccct
attggacatgtagggactggattaactgaggcagatttggagatgttaaaggaggaaatt
gataaaatagttattagagatttaggtgaagaggttgaggtagagccaaaaatagttatt
gaagttgcttatgaggagatacagaaatctgataaatatccttgcggttatgctttaaga
ttcccaagggttgtgaggtttaggtttgataaaggagttaatgatataaatactgtagaa
gatgttgaaagaatatacgaaattcagaggggaaggaaataa

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