Methanocaldococcus sp. FS406-22: MFS40622_1025
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Entry
MFS40622_1025 CDS
T01175
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mfs
Methanocaldococcus sp. FS406-22
Pathway
mfs03410
Base excision repair
mfs03430
Mismatch repair
mfs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MFS40622_1025
03430 Mismatch repair
MFS40622_1025
03440 Homologous recombination
MFS40622_1025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfs03400
]
MFS40622_1025
DNA repair and recombination proteins [BR:
mfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MFS40622_1025
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MFS40622_1025
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MFS40622_1025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
DHH_CID
GAS
CASP_C
Glyco_hydro_45
Motif
Other DBs
NCBI-ProteinID:
ADC69705
UniProt:
D3S4E1
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All DBs
Position
1027822..1029231
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AA seq
469 aa
AA seq
DB search
MENWAELKKGAKVLQNNKNSKILIVTHIDTDGLTSRVILQKLAERLNLDADFMFLKQITI
ETIDDIPFKDYDLIIFADLGSGQLKMIKEKLDELNLSDKRDKIIILDHHQPEEIKIPKTI
IHINPLTIGKSGAEICGAGVSYLFAKAINNEWIDLAKYAVLGAVGDVQNIEGKLIGLNRK
ILCDAIMSGDIKVKTDLQMYGRQTRPLFVSMRYWADVRTDLLNNDSKIIKYIQSINKKYD
IEINPTMRLAEIPFEHKRIIGNELLIKCLNYVPNHWTPYVPKVIFGEVYEFRGEEFGSPL
RDLEEFSTCINACSRYGDYETALNVLMGDRDKYYRKMLSNLRKHRNNLREALEHVKNDVE
IIQKDNFQYFETDKIMPNIVGIVAGMSYSIEEVDWMKPIFAITEDDNGYKVSARCPKLLC
FAEDVNLAKAIKYASEKVNGSGGGHKFACGAYIPDNKREFIKYLEIALK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattgggcagagttaaaaaaaggagctaaggtattgcaaaacaacaaaaacagc
aaaattttaatagttacccacatagatactgacgggctaacatcgagagttattttacaa
aaattggctgagagattaaacttagatgctgatttcatgtttttaaagcaaattaccata
gagacaatagatgatattccatttaaagactatgacttaataatctttgctgatttaggt
agtgggcagttaaagatgattaaagagaagttagatgaactcaacttatcagataaaagg
gataaaatcatcatcttagaccaccaccagccagaggagataaagattcctaagaccatt
atccatataaaccccctaactattggaaaaagtggagctgaaatttgtggggctggagtt
tcctatctatttgcaaaagctataaacaatgaatggattgatttggctaaatatgctgtt
ttaggagctgtgggggatgtgcaaaacatagaagggaaattaattggcttaaatagaaaa
atactatgcgatgccattatgagtggagatattaaggtaaagacagatttacagatgtat
ggtaggcaaacaaggccgttatttgtatctatgagatattgggcagatgttagaactgat
ttgctaaacaatgactcaaagataataaaatacatccagagtatcaataaaaagtatgat
attgagataaatccaacaatgaggttagctgagattccatttgagcataagaggattatt
ggaaatgagcttttaataaaatgcttaaattatgttccaaatcattggacaccctacgtt
ccaaaggttatatttggagaggtttatgaatttagaggggaagaatttggctctccattg
agggatttggaggagttctcaacctgtataaacgcatgctcaagatatggagattatgaa
actgctttaaatgtgttgatgggagatagggataaatactatagaaaaatgctttcaaat
ttgagaaagcatagaaacaacttaagagaagctttagagcatgtaaagaatgatgttgag
ataattcaaaaggataacttccaatactttgagacagataaaattatgccaaatattgtt
ggaatcgtggctgggatgagctattctatagaggaagtggattggatgaagccaattttt
gcaataacagaggatgataatggttataaggtttctgcacgatgccctaagttgttatgc
tttgctgaagatgtgaatttagctaaagcaataaaatatgcctcagagaaggttaatggt
agtgggggagggcataagtttgcttgcggggcatatattccagataataaaagagaattt
ataaaataccttgagattgctttaaagtaa
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