KEGG   Methanothermus fervidus: Mfer_0505
Entry
Mfer_0505         CDS       T01351                                 
Name
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mfv  Methanothermus fervidus
Pathway
mfv03030  DNA replication
mfv03410  Base excision repair
mfv03420  Nucleotide excision repair
mfv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mfv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Mfer_0505
   03410 Base excision repair
    Mfer_0505
   03420 Nucleotide excision repair
    Mfer_0505
   03430 Mismatch repair
    Mfer_0505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mfv03032]
    Mfer_0505
   03400 DNA repair and recombination proteins [BR:mfv03400]
    Mfer_0505
Enzymes [BR:mfv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Mfer_0505
    6.5.1.6  DNA ligase (ATP or NAD+)
     Mfer_0505
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Mfer_0505
DNA replication proteins [BR:mfv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Mfer_0505
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Mfer_0505
DNA repair and recombination proteins [BR:mfv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Mfer_0505
   NER (nucleotide excision repair)
    Other NER factors
     Mfer_0505
   MMR (mismatch excision repair)
    Other MMR factors
     Mfer_0505
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DUF5695
Other DBs
NCBI-ProteinID: ADP77305
UniProt: E3GYC3
LinkDB
Position
480742..482406
AA seq 554 aa
MKYIKLVELYEKLESTTKKLKKIDLLSKFLSEVDKELLPAVVLMTLGTVFPGWSEKELGV
GFKLLVKAMSIVSGISANKIEEKIAEEGDVGLAAEKLFKKRRQVTFITQPLTVEKVYTNL
KKVADITGEGAQTRKINLITDILSLAKPKEAKYLTRMILEELRVGVGEGIMRDAIAKAFK
VDPKIVERAHMLTNDLGLVAKVACEKGVEGLKQLSLKPGRPVKPMLAQTAPSIKKAIEEM
GKAFCETKYDGIRVQIHRKNSEIVVFTRRLENITNAVPDIVDAVEKALPKKDFIVEGEII
GVKNGRPIPFQYLLHRIRRKYEIEKAIKEIPFTLFLFDVLYFENPLIDEKFENRRKILES
ITKTKEGKVELSRKVEVTCENIDDAEKLFKESIEAGHEGIMIKDPNAPYIPGIRGKKMLK
YKAEPETLDLVVIGGDYGEGKRAHLVGSYLVAARDEDTGELKPVAHVATGLDDDTLKNLT
ERMERIMVNKKGKKIEVEPKIILEVAFSEIVKSPEYESGYSLRFPVVKRIRDDLSLEDVD
TVQRIESMYKKKFG
NT seq 1665 nt   +upstreamnt  +downstreamnt
ttgaaatatataaaacttgtggaattgtatgaaaaattagaatcaacaacaaaaaagtta
aaaaaaatagatttgctttctaaatttttatcagaagtagataaagagttgcttccagct
gtagttttaatgacattaggcactgtttttcctggatggagtgaaaaagaattaggtgta
ggatttaaattacttgtaaaggcgatgtcaattgtttctggaatatctgctaacaaaata
gaagaaaaaattgctgaagaaggcgatgtagggctagcagcagaaaaattgttcaaaaaa
agaagacaagtcacctttattacacaaccacttacagttgagaaagtctatacaaattta
aaaaaagttgcagacataacaggagaaggtgcacaaacacgtaaaataaatcttataaca
gatattctttctttggcaaaaccaaaggaggccaaatatttaacaagaatgatattagaa
gagttgagggtaggtgtaggcgaaggaataatgagggatgcaattgctaaagcatttaaa
gtagatccaaagattgtagaacgagctcatatgttaacaaatgatttaggtttagttgca
aaagttgcatgtgaaaaaggagtcgaaggcttaaaacaactttcattgaagcccggcagg
cctgttaaacctatgttagcacaaacagcgccaagcattaaaaaagccatagaagaaatg
gggaaagccttttgtgaaactaaatatgatggaataagagtccaaatccatagaaaaaat
tcagaaatagttgtttttacacgtagacttgaaaatataactaatgcagttccagatata
gttgatgctgtggaaaaagcattgccaaaaaaggatttcatcgttgaaggagaaataata
ggagttaaaaatggtaggccaattcctttccagtatttattacacagaattagacgtaaa
tatgaaattgaaaaggctataaaagaaattccttttacattgttccttttcgatgtttta
tattttgaaaatccattaatagatgaaaaattcgaaaatagaagaaaaatattagaatct
ataacaaaaactaaggaaggaaaggttgaacttagtcgaaaagtagaagtaacttgtgaa
aatatagatgatgcagaaaaattgtttaaggaatcaatagaagctggtcatgaaggaata
atgataaaagatccgaatgctccatatattccaggaatacgtggaaaaaaaatgttaaaa
tataaagcagagccagaaactcttgatttagtagtaattggtggagattatggtgaaggt
aaaagagcacacctagtgggttcatatcttgttgcagctagagatgaagatacaggggag
ctaaaacctgttgcacatgttgcaactggtttagatgatgatacacttaagaatttaact
gaaagaatggaacgcataatggtaaataaaaaaggtaaaaagatagaagttgaacccaaa
ataatattagaagtagcatttagcgagattgttaaaagtccagaatatgaaagtggttat
tccctgcgattccctgtcgttaaaagaataagagatgatttaagtttagaggatgttgac
actgtccaaagaatagaatcaatgtacaagaaaaaatttgggtga

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