Mycolicibacterium fallax: MFAL_37290
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Entry
MFAL_37290 CDS
T06894
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfx
Mycolicibacterium fallax
Pathway
mfx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MFAL_37290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfx03400
]
MFAL_37290 (mfd)
Enzymes [BR:
mfx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MFAL_37290 (mfd)
DNA repair and recombination proteins [BR:
mfx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MFAL_37290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
LSDAT_prok
DUF3638
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BBZ00263
UniProt:
A0A1X1RKZ1
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All DBs
Position
3854676..3858344
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AA seq
1222 aa
AA seq
DB search
MTKPGHTHVQTPIAGLVELALTAPTLTELAERAAAAPQTLDIVAPPAAQPFVAAALARQH
PLLVVTATGREADDLTAELRGVYGDAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAR
PDDERLGPPLKVVVTTARSLLQPMARGDGAATDAEPVTLAVGAEAGFDDVVTRLVELAYT
RVDMVGKRGEFAVRGGILDIFAPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEVPIGHL
VAVPCRELLLTDAVRDRAAQLAGATPTTDNTVVGTVGEMLAKLAEGIPVDGMEALAPVLW
ADGLTLLSDHLPEGAPLLICDPEKVRTRSADLIKTGREFLDASWSVAAMGADAPIDIEAL
GGSGFRGLAEVREAAEAGGHPWWTLSQLPNEAALELDIRPAPTTRGSQAGIDEVFAMLRA
HAATGGVAAIVAPGTGTANRVVEQLGGADVPAALLEPGATPPPGVVGVLRGPLHTGIVLP
GANLVVITETDLTGNRVTAGEGKRLAAKRRNTVDPLALAAGDLVVHDQHGIGKFVEMTER
IVGGARREYLVLEYASAKRGGGTDKLYVPMDSLDQLSRYVGGTAPTLSRLGGSDWTNTKT
KARKAVREIATELVALYAKRQAAPGHAFGPDSPWQAEMEDAFGFTETVDQLTAITEVKAD
MEKPIPMDRVICGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLADQHLQTFTTRMAG
FPVTVKGLSRFTDPADSKAVVAGLADGSVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFG
VEHKEHIKGLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDD
KQVAAALRRELLRDGQAFYIHNRVRSIDDAAARVRALVPEARVVVAHGQMPEEQLERTVQ
GFWHREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFL
YPPEVPLTETAHDRLATIAQNNDLGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLY
VRLVGEAVEAYRAAADGQTVTTSEPKEVRIDLPIDAHLPPDYIGSDRLRLEGYRRLASAA
DDDAVRAVVEELTDRYGPLPEPARRLVAVARLRLLCRRYGVTEVSATGSAGQPATLRLAP
LTLLDSQQLRLSRMYPGAAYRATTSVVQVPIPRAGSGIGAPRIRDVELAQAVADLLLALD
GRPQGEVDLTDLSTPVGEGDSA
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaccggggcacacccatgtccagaccccgatcgcgggcctggtcgagctggcg
ctgaccgcgcccaccctcaccgaactggccgaacgcgccgccgcggcgccgcagaccctc
gacatcgtcgcgccgccggccgcccagcccttcgtggccgcggcgctggcccggcagcac
ccgctgctggtggtcaccgccaccgggcgagaggccgacgacctgaccgccgaactgcgc
ggggtgtacggcgacgcggtcgcgctgttcccgtcctgggagacgctgccgcacgagcga
ctctcgcccggggtggacaccgtcggcgcccggctgctgctgctgcgccgactggcccgg
cccgacgacgagcggctcggcccgccgctgaaggtggtggtcaccaccgcccgctcgctg
ctgcagccaatggcccgcggcgacggcgccgccaccgacgccgaaccggtcaccctggcc
gtcggcgccgaggccgggttcgacgacgtcgtcacccggctggtcgaactggcctacacc
cgggtcgacatggtcggcaagcgcggcgaattcgcggtccgcggcggcattctggacatc
ttcgccccgaccgccgagcatccggtccgcgtcgagttctggggcgacgaggtctccgag
atgcggatgttctccgtcgccgatcagcgctccatcccggaggtcccgatcgggcatctg
gtcgccgtgccgtgccgggaactgctgctcaccgacgcggtccgagaccgggccgcgcag
ctggccggcgcgaccccgacgaccgacaacaccgtcgtcggcaccgtcggggagatgctc
gcaaagctggccgagggcatcccggtcgacggcatggaggcactggccccggtgttgtgg
gccgacggactgaccctgctgtccgaccacctgcccgagggcgccccgctgctgatctgc
gatccggagaaggtccgcactcggtcggcggacctgatcaagaccggccgcgagttcctc
gacgcatcctggtcggtcgcggcgatgggggccgacgccccgatcgacatcgaggccctg
ggcggctccggcttccgcggcctcgccgaggtccgcgaggccgccgaagccggcgggcac
ccctggtggacgctgagccaactgcccaacgaggccgcactcgaactcgacatccggccc
gcgccgaccacccgcggcagccaggccggcatcgacgaggtgttcgccatgctgcgcgcg
cacgccgccaccggcggcgtcgcggcgatcgtcgccccgggcaccggcaccgcgaaccgc
gttgtcgagcaactcggcggagccgatgttcccgccgcattgctggagcccggcgccacc
ccgccgccgggcgtggtcggggtgctgcgcgggccgctgcacaccggcatcgtgctgccc
ggggcgaacctggtggtgatcaccgagaccgacctgaccggcaaccgggtcaccgccggc
gagggcaagcggctggcggccaagcgccgcaacaccgttgacccgctggcgctggccgcc
ggtgacctggtggtgcacgaccagcacggcatcggcaagttcgtcgagatgaccgagcgg
atcgtcggcggggcccgccgggagtacctggtactggagtacgcctcggccaaacgtggc
ggcggcaccgacaagctgtatgtgccgatggactccctggaccagctgtcccgctatgtc
ggcggcaccgcgcccaccctgagccggctcggcggcagcgactggacgaacaccaaaacc
aaggcgcgcaaggcggttcgggagatcgccaccgaactcgtcgcgctgtacgccaaacgt
caggccgcacccgggcacgccttcggcccggactccccgtggcaggccgagatggaggac
gcgttcgggttcaccgagaccgtcgatcagctgaccgccatcaccgaggtgaaggccgac
atggagaagccgatcccgatggaccgggtgatctgcggtgacgtcggctacggcaagacc
gagatcgcggtgcgcgcggcgttcaaggcgattcaggacggcaagcaggtggcggtgctg
gtgccgaccacgctgctggccgaccagcacctgcagaccttcaccacccggatggccggc
ttcccggtcaccgtcaaggggctgtcgcggttcaccgatccggccgactccaaggccgtg
gtggccggattggccgacggcagtgtcgatgtggtgatcggcacgcaccggttgctgcag
accggggtgcgctggaaggacctcgggctggtcatcgtcgacgaggagcagcgcttcggt
gtcgagcacaaggaacacatcaagggcctgcgcagtcacgtcgatgtgctcaccatgagc
gccaccccgatcccgcgcaccttggagatgagcctggccgggatccgggagatgtcaacc
attctcaccccgccggaggagcgctatccggtgctgacctacgtcggcccgcacgacgac
aagcaggtcgccgccgcgctgcgccgcgaactgctgcgcgacgggcaggcgttctacatc
cacaaccgggtccgcagcatcgacgacgccgcggcgcgggttcgtgccctggtgcccgag
gcccgcgtcgtcgtcgcgcacggccagatgcccgaggagcaactggagcggaccgtgcag
ggcttctggcaccgcgagttcgacatcctggtctgcaccaccatcgtcgagaccgggctg
gacatctccaatgccaacaccctgatcgtcgagcgcgccgacaccttcgggctcagccag
ctgcaccagctgcgcggccgggtcggccggtcccgggaacgcggctacgcctacttcctg
tacccgccggaggtgccgctgaccgagaccgcgcatgatcggctggccaccatcgcgcag
aacaacgacctgggcgcgggcatggcggtcgcgctcaaggacctcgaaatccgcggcgcc
ggaaacgttctcggcgtggagcagtccgggcacgtcgccggtgtcggcttcgacctgtac
gtgcggctggtcggcgaggcggtggaggcctaccgggcggccgccgacgggcagaccgtc
accaccagcgagcccaaggaggtgcgcatcgatctgccgatcgacgcgcatctgccgccg
gactacatcggcagcgaccggctgcggctggagggctaccgccggctggcctcggccgcc
gacgatgacgcggtgcgcgcggtggtcgaggaactcaccgaccggtacggcccgctgccc
gaaccggcccgacggctggtcgcggtggcccggctgcggctgctgtgccgccggtacggg
gtcaccgaggtctcggcgaccggatcggccggccagcccgccaccctgcggctggccccg
ttgacgctgctggactcccagcagctgcggctgtcccggatgtatcccggcgcggcgtac
cgggccaccacctcggtggtgcaggtgccgattccgcgcgccggcagtggcatcggagcg
ccgcggatccgggatgtcgaactcgcgcaggcggtggccgatctgctgctcgcgctggac
ggccggccccagggcgaggtcgatctgaccgatctgagcaccccggttggtgaaggagac
agcgcatga
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