Marinobacterium iners: CFI10_07585
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Entry
CFI10_07585 CDS
T07136
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mgeo
Marinobacterium iners
Pathway
mgeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mgeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFI10_07585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgeo03019
]
CFI10_07585
03009 Ribosome biogenesis [BR:
mgeo03009
]
CFI10_07585
Enzymes [BR:
mgeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFI10_07585
Messenger RNA biogenesis [BR:
mgeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFI10_07585
Ribosome biogenesis [BR:
mgeo03009
]
Prokaryotic type
rRNA helicases
CFI10_07585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF6702
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QSR34853
LinkDB
All DBs
Position
complement(1571203..1572951)
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AA seq
582 aa
AA seq
DB search
MSNTETSPASFGDLGLSAPILNALTDVGYETPSPIQARSIPPLLEGRDLLGMAQTGTGKT
AAFALPLLQRIDAAATHPQVLILAPTRELALQVATACEKYAHHLPGLRTLSIYGGQGYDT
QIRGLRRGAQIIIGTPGRVMDHIRRGTLQLDKLQALVLDEADEMLRMGFIDDVEWVLQHT
PAQRQIALFSATMPQAIRNIAENYLNNPAVIKIQSQTATASTIRQRVWTVRGMSKTQALT
RVLEMHEHEAALVFVRTKTSTESLADELTRAGFPAAALHGDIAQVQRERIVSKLKKGELD
VVIATDVVARGLDVERISHVINYDIPYDNESYIHRIGRTGRAGRNGDAILFVAPREQRLL
KQLERTTRQPLETLQMPSAKEINALRAERLQKKILAAAESADLSQYQPVIDSLQQNSELT
HEQMLAATLALMHSDKPLWMNENEPDPNRPVRERPERGERPERGRGKPGRNDPVAEGMER
YWIGVGHLHGVKPGNIVGAVANEANLESRLIGRINIADEFSCIDLPANLSSEQIQKLKRA
RVCGQKLDLRPWTDASAPRRSRSSNSSTSNSNKPSRRAARAN
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacactgaaaccagccccgccagctttggcgatttgggactgtccgctcctatt
ctcaacgctctgactgacgttggctacgaaaccccttcgccaattcaggccaggagtatc
ccgccgctgctggagggacgggacctgcttggcatggctcagaccggtaccggcaagacc
gccgcatttgcattgccgctgctgcagcgtattgacgcagccgccactcaccctcaggtt
ctgattctggcaccgacccgtgagctggctctgcaggttgcgactgcctgtgagaaatac
gcccaccatctgccagggctgcgtaccctgtcgatctacggtggacagggttacgacacc
cagatccgtggcctgcgccgtggcgcccaaatcatcatcggcaccccggggcgcgtgatg
gaccatatccgtcgcggcacgctgcagctggacaagctgcaggcactggttctcgacgaa
gctgacgaaatgctccgcatgggcttcatcgacgatgtggagtgggtactgcagcacaca
ccggcacagcgtcaaatcgcgttgttctcggccaccatgccgcaagcgatccgcaacatc
gcggaaaactacctgaacaacccggccgtaatcaaaatccagtcacagaccgcaacggcc
agcaccattcgccagcgcgtgtggacggttcgcggcatgagcaagactcaggccctgacc
cgcgtacttgaaatgcatgagcatgaagccgctctggtgttcgtacgcaccaaaacctca
accgaaagcctggcggatgaactgacccgtgcaggtttcccggcggctgcactgcacggc
gatatcgctcaggttcagcgtgaacgcatcgtcagcaagctgaaaaaaggcgagctggat
gtagtgatagctactgacgtggttgcccgtggcctggacgttgagcgcatcagccacgtt
atcaactacgacattccgtacgataacgagtcctatatccaccgtatcggccgtaccggt
cgtgccgggcgcaacggcgatgccattctgttcgttgcaccgcgcgagcagcgtctgctc
aaacagctggagcgtactacgcgccagccgctggaaacgttgcagatgccgagcgccaag
gagatcaatgcgctgcgcgccgaacgtctgcagaagaagattctggccgccgccgaatcg
gccgacctcagccagtaccagccggtgatcgattccctgcagcagaattccgaactgact
cacgagcagatgctggccgcaacactggcgctgatgcacagtgacaagccgttgtggatg
aacgaaaacgaacccgatcccaaccggccagtacgtgagcgccctgagcgtggcgaacgc
cctgaacgtggccgaggcaaaccgggtcgtaacgatcctgttgccgaaggcatggaacgc
tactggatcggcgttggtcacctgcacggcgtcaagccgggcaatattgtgggtgccgtt
gccaatgaagccaacctggaaagccgcctgatcggtcgtatcaacatcgccgatgagttc
agctgcatcgacctgccagccaacctgagcagtgagcaaattcagaagctcaagcgtgca
cgcgtgtgtggccagaaactggacttgcgcccctggaccgatgcatctgctccgcgccgc
tcacgcagcagtaacagcagcaccagtaacagcaacaagccatcacgccgcgccgctcgc
gccaactga
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