Micromonospora halotolerans: RMN56_09190
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Entry
RMN56_09190 CDS
T09415
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhaw
Micromonospora halotolerans
Pathway
mhaw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhaw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RMN56_09190 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhaw03400
]
RMN56_09190 (ligD)
Enzymes [BR:
mhaw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RMN56_09190 (ligD)
DNA repair and recombination proteins [BR:
mhaw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RMN56_09190 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WNM41498
LinkDB
All DBs
Position
complement(1960093..1961007)
Genome browser
AA seq
304 aa
AA seq
DB search
MPADRFKVDVEGRALELSNLDKVLYPKAGFTKGEVIDYYTRIAPVLLPHLRDRALTRIRY
PNGVDGGSFFEKNAPAATPDWVRTENLPAPGSSKGRETIDYVVADDLPTLVWLANLAALE
LHTPQWKVGEHPDMMVVDLDPGAPAALRQCCQVALLMRDRLAADGIESYPKTSGKKGMQL
CCPIAGTQDADDVSAYAKRIAQELEKEQPKQIVSKMAKNLRPGKVFIDWSQNNAAKTTVA
PYSLRAQDVPSASTPLTWDEVEAGAAGKRPSTKPYTATEVLKRVEKQGDLLAPLLEGGPE
LPLR
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgaccgcttcaaggtggacgtggagggccgcgcgctggagctgtccaacctg
gacaaggtgctctacccgaaggccggcttcaccaagggcgaggtgatcgactactacacc
cggatcgccccggtgctgctgccgcacctgcgcgaccgggcgctgacccggatccgctac
cccaacggcgtcgacggcggctcgttcttcgagaagaacgcgcccgccgccacccccgac
tgggtacgcaccgagaacctgccggccccgggatcgagcaaggggcgggagaccatcgac
tacgtggtggccgacgatctgcccacgctggtctggctggccaacctcgccgccctggag
ctgcacacgccgcagtggaaggtcggcgagcacccggacatgatggtggtcgacctggac
ccgggcgccccggccgcgctgcggcagtgctgccaggtggcgctgctcatgcgggaccgg
ctggccgccgacggcatcgagtcgtacccgaagacgtcggggaagaagggcatgcagctc
tgctgcccgatcgcgggcacgcaggatgccgacgacgtgtcggcgtatgcgaagcggatc
gcgcaggagctggagaaggagcagccgaagcagatcgtctcgaagatggcgaagaacctg
cgccccgggaaggtcttcatcgactggagccagaacaacgcggccaagacgacggtggcg
ccgtactcgctgcgcgcccaggacgtgccctcggcgtccaccccgctgacctgggacgag
gtcgaggcgggcgcggccggcaagcggccgtcgacgaagccgtacacggccaccgaggtg
ctgaagcgggtggagaagcagggcgacctgctggctcccctcctggagggcggccccgag
ctgccgctgcgctga
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