Methanomethylovorans hollandica: Metho_1787
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Entry
Metho_1787 CDS
T02418
Name
(GenBank) topoisomerase IA
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mhz
Methanomethylovorans hollandica
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhz03032
]
Metho_1787
03400 DNA repair and recombination proteins [BR:
mhz03400
]
Metho_1787
Enzymes [BR:
mhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Metho_1787
DNA replication proteins [BR:
mhz03032
]
Prokaryotic type
DNA Topoisomerases
Metho_1787
DNA repair and recombination proteins [BR:
mhz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Metho_1787
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
zf-C4_Topoisom
Toprim
DUF3022
DAO_C
Peroxin-22
Exonuc_VII_S
Motif
Other DBs
NCBI-ProteinID:
AGB49971
UniProt:
L0KXX3
LinkDB
All DBs
Position
1773604..1775979
Genome browser
AA seq
791 aa
AA seq
DB search
MYRARFLQGAGYIMTVVVFTEKNKAASQIANILSGGKPDRKLVEGVPVYMFRRNGQEWQV
MGLSGHIMGYDFPQELNNWRSVDPAILIDTRPIKTVTKKPFADAIISLAREADAIILACD
FDREGENIGFEAKELASRVSRAPVKRARFSSLSDSEIIKAFDNPVEPDAAMAMSAEARQI
LDLKMGAAFTRYLTLAVRERARTKEILSIGPCQTPTCGFVYERDKAIKEFNPEDFWKIEA
LFHAKDMDFKGVHRAGNIKDKAKAAEIFDRIRAGKTGLVTKKSVTEIKTNAPYPLNTTEF
LKRASKFLNISPESALEIAEQLYLNGFTSYPRTETNKYADDFDFKSKVIAFTSTEYRDHA
LAILSGGDIVVRNGIKDGHDHPPIHPIKAVAVKEVEKAVKTEGAGKIYDLIARHFLANLM
PAALFEKTHLEITVEKELFDSSGSIMKNEGWMVVYPFETKNDKLLPDIKEQDEVKVKKLE
NIASKTTPPKHLTEAELLTLMDKHGIGTKATAPSHIETNKKRGYFETKGKTIVIQETGFI
LMDALSTSIPVVVKPEIRASIESLVQEVEDGSKDLEHAVAEGTELIKMMYSRLTESRDSI
VSRLAGSINDGTATDDKKNYIGKCPDCGRVLRIISTEKGRFVGCTGYPQCRNSYPLPREG
ALSVLRSKNCKKGGAAVIKVGNKYCWAVGIGPCFACDLMKKCFPPEVVGPCPICDGEMCL
VTTKDSRFLGCSNRCGRTQSLPQEGRLTVLERKCEVCGWKMIRIKEKDKEAIEKCVNRSC
GKDQGKKRLST
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgcgcacgattcttacagggtgcgggatatattatgactgttgttgtatttacc
gaaaagaacaaagctgcttcacagatagccaacattttaagcggaggcaagcctgacagg
aagcttgtcgaaggagtgccagtctatatgttccgcaggaatggccaggaatggcaggta
atgggcctttcgggtcatataatgggctatgattttccacaggagctgaacaactggcgc
tcggtggacccggccatattgatcgatacacgacccatcaagacagttacaaaaaaaccg
tttgcagatgccattatttctcttgccagggaagctgatgcgataatacttgcttgtgat
tttgacagggaaggcgagaatatcggttttgaagcgaaggaacttgcatccagggtttcc
cgtgctcctgtaaaaagagctaggttctcttcattgtcggattctgagatcattaaggct
tttgataatccggtggaacctgatgcagccatggcaatgtctgcggaagcccgccagatc
ctcgaccttaagatgggcgctgcttttacccggtacctcaccctggccgtaagagaaagg
gcacgtaccaaggaaatcctttccataggaccgtgccagacccctacctgcggtttcgta
tatgaaagagacaaggccattaaagagttcaatccggaggatttctggaaaatagaagca
cttttccatgcaaaggacatggacttcaaaggagtgcaccgggcaggcaatataaaagat
aaggcgaaagcagccgaaatattcgatcgtatccgggcaggcaagaccgggctggttaca
aaaaagagcgtcactgaaataaagacaaatgcaccatacccgctcaacactaccgaattc
cttaaacgtgcctctaagttccttaacatcagccccgaatctgctcttgagatagccgag
cagctgtatctgaacggtttcacaagctatccgaggactgaaacaaataaatatgccgat
gattttgattttaagtcaaaagtcatagcctttacatccacagaatacagagaccatgca
cttgccatactctcaggcggggatattgttgtgcgcaatggtataaaagacggacatgac
caccctcccatacatccgataaaagctgttgctgtaaaggaagtggaaaaagctgtaaag
acagaaggtgccggcaagatctatgacctgatagccaggcattttcttgctaacctcatg
cctgcggctttatttgagaagacgcatctcgagatcacagtggaaaaagaactgttcgac
tcttcggggtccataatgaaaaacgaaggctggatggtagtttatccgtttgagacaaag
aacgacaaattgctgcccgatataaaggagcaagatgaggtcaaggtgaaaaagctggag
aacatagcttccaaaaccactccaccaaaacaccttactgaagccgaacttctcaccctc
atggataaacatggtatcggcaccaaggcaacagctccttcccatatagagactaacaag
aaacgtggttattttgaaacaaaggggaagaccatagtcatccaggaaactggtttcatt
ctgatggacgctcttagcacatcgataccagttgtagtgaaaccggaaataagggcaagt
atagagtccctggtgcaggaagtggaggatggcagcaaggacttagagcatgcagtggct
gaggggacagagcttatcaaaatgatgtattcacggcttaccgagagccgggattccatt
gtatcgcggcttgcaggatctataaatgatggcactgccactgatgacaaaaagaactat
attggcaaatgcccggattgcggacgtgtgctgcgcataataagcactgagaagggacgt
tttgtagggtgcaccggctatccgcaatgcaggaacagctatcctttgcccagggaaggt
gcactttcagtgcttcgttcaaaaaattgtaagaagggtggagctgcagtaataaaggta
gggaacaaatattgctgggcagtgggtataggtccatgctttgcatgtgaccttatgaag
aaatgcttcccccctgaagtagtggggccctgcccaatatgtgacggagagatgtgtctt
gtcactacaaaggattcacgttttctgggttgtagcaaccgctgtggccgtactcagtcc
ctgccgcaggaaggcagacttacagtgcttgagcgcaagtgtgaggtgtgtggatggaaa
atgatccgcataaaggaaaaagataaggaagccattgaaaagtgtgtaaatcgcagctgt
ggaaaagatcagggtaaaaaaaggctttcaacttga
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