Mycobacterium intracellulare ATCC 13950: OCU_09290
Help
Entry
OCU_09290 CDS
T02158
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mia
Mycobacterium intracellulare ATCC 13950
Pathway
mia03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OCU_09290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mia03400
]
OCU_09290
Enzymes [BR:
mia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OCU_09290
DNA repair and recombination proteins [BR:
mia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OCU_09290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFC42149
UniProt:
H8ISV2
LinkDB
All DBs
Position
911972..914251
Genome browser
AA seq
759 aa
AA seq
DB search
MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ
ESFFEKQLAASAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGPATRLVFDLDPGEGVTMAQMSKVARAVRDLIAGIGLRTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLSRVARVGDLLAELDEDAPVPDRL
TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFNDSAEKGEVI
VNLHGSKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEG
KWDGYRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSSGVP
NFHEMQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLPGDG
REALEHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGI
GSLLMGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGVTYV
RPELVGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgagtccgacggcggggccacgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcggatcgccgaggtgatg
atcccgcacatcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatcctttttcgagaagcaactcgccgcgtcggcacccgactggctgccgcgcgccagc
gtgacccatcgatccggaacgacgacctatccgatcatcgacgaccccaccggcctggcc
tggatcgcccaacaggcggcgctggaggttcacgtcccgcagtggcggttcgtcgccgag
tggacccgcagccgggccgaagaactcaagcccggcccggcgacgcgattggtgttcgac
ctcgaccccggcgaaggcgtgacgatggcgcagatgtccaaggtggcgcgcgccgtgcgc
gacctgatcgccgggatcggcctgagaaccttcccgctcaccagcggcagcaagggactg
catctgtatgcgccgctcgacgagccggtgagcagcaaaggcgccacggtgttggccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagcttgtcacgtcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacc
atcgcgccgtattccctgcgcggacgcgaacatcccaccgtcgcggcgccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagctgcggtatgacgaagtgctgtcccgggtc
gcgcgcgtcggcgacctgcttgcagagctggacgaggacgctccggtgccggatcggttg
accaagtaccgcagcatgcgcgacgcgtcgaagacccccgagccggttccggcggcgaaa
cccgctgtcggccaaggaaacaccttcgtcatccaggaacaccacgcgcgacgcctgcac
tacgacttccggctggagcgcgacggcgtgctggtgtcctgggcggtgcccaaaaacctg
cccgaaaccacgtcggtgaaccacctggcggtccacaccgaggaccatccgctggaatac
ggcgggttcgaaggcgtcatccccaagggcgaatacggcgcgggcaaggtgatcatctgg
gactccggaacctacgacgccgaaaagttcaatgactccgccgaaaaaggggaggtcatc
gtcaacctgcacggcagcaagatctccggacgctacgcgctgattcaaaccaatggcgac
cagtggttggcacatcggatgaaggaccagaaggtcttcgagttcgacaccatcgcaccc
atgctggccacccacggttcggtgacggccctgaaggcaggtcagtgggcgttcgagggc
aaatgggacggttaccggcttctgatcgaggccgaccacggtgcctttcgggtgcggtcg
cgacgcggtcgcgaagtcacccaggaataccgcgaactgcgttggctggcagacgatctc
gccgaccatcacgtggtgctcgacggggaggctgtcgtcctggactcctccggggtgccc
aactttcacgagatgcaaaaccgtggacggggctcacgggtcgaattctgggcgttcgac
ctgctctacctcgacggccgctcgttgctgcgggcccgctaccgggatcggcgaaaactg
ctggaaatgttggccgccggcagcaggctcatcgtccccgacctactgcccggcgacggc
agggaggcgctggagcactccgcggagcgcggttgggagggggtgatcgccaagaagcgc
gactccacctatcagccgggccgccgctcgtcgtcgtggatcaaggacaagcactggaac
acccaggaagtcgtcatcggcggttggaaagccggggaaggcggacgcagcagcggcatc
ggctcactgctgatgggtatccccaccgcgggcggactgcacttcgccgggcgcgtcggc
accgggttcaccgaccgcgacctggcaaacttgaagaagacgctggcaccgctgcacacc
gacgaatccccctttgacccaccgcttcccaggagcgaagcgcgcggcgtgacgtatgtg
cggccggagctggtcggggaggtgcgctacagcgagtggaccccggatgaccggttacgc
caatcgagttggcgcggactacgaccggacaaggaggcgagtgaggtggtgcgcgagtga
DBGET
integrated database retrieval system
