KEGG   Mycobacterium intracellulare ATCC 13950: OCU_37710Help
Entry
OCU_37710         CDS       T02158                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mia  Mycobacterium intracellulare ATCC 13950
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:mia00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    OCU_37710
   03410 Base excision repair
    OCU_37710
   03420 Nucleotide excision repair
    OCU_37710
   03430 Mismatch repair
    OCU_37710
Enzymes [BR:mia01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OCU_37710
    6.5.1.6  DNA ligase (ATP or NAD+)
     OCU_37710
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     OCU_37710
DNA replication proteins [BR:mia03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    OCU_37710
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     OCU_37710
DNA repair and recombination proteins [BR:mia03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     OCU_37710
   NER (nucleotide excision repair)
    Other NER factors
     OCU_37710
   MMR (mismatch exicision repair)
    Other MMR factors
     OCU_37710
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
4001613..4003142
Genome map
AA seq 509 aa AA seqDB search
MLLLDVAKASTDVGSTSSRLRKVAHIADLLARAAPDPALVMIVVSWLSGELRQRQIGVGW
AALRSRPPPASHATLTVGAVDATFSEIGAVSGKGAQARRAALLATLFAAATEAEQTFLLR
LLGGELRQGALAGIMADAVAKAAGSPAAAVQRAAMLGGDLPAVAAAALSGEPAALQAFTL
RVGRPVGPMLAQTAPSVADAIERHGGRAIFEAKLDGARVQIHRSGDQVTVYTRSLDDVTA
RVPEVVEATLALPVNDLIADGEAIALRPDNRPQRFQVTASRFGRSVDVAAAVAAQPLSVF
FFDILHRDGVDLLDAPTTDRLAALDALVPSAQRVDRLLTSDPVEAGAFLDATLAAGHEGV
MAKAPDAQYQAGRRGAGWLKVKPVHTLDLVVLAVEWGSGRRRGKLSNIHLGARDPDSGEF
VMVGKTFKGMTDAMLDWQTARFTDLAIGGTDGYVVHVRPEQVVEVALDGVQKSSRYPGGL
ALRFARVVRYRDDKGPAEADTIDAVRALY
NT seq 1530 nt NT seq  +upstreamnt  +downstreamnt
gtgctcctcctcgacgtggcaaaggcgtccaccgacgtcggaagcacgtcgtcacggctg
agaaaagtcgcccacatcgccgacctactggcgcgggccgcacccgatcccgccctcgtc
atgatcgtcgtgtcctggctgtccggcgagttgcgccagcgccagatcggggtcggctgg
gcggcgttgcgctcgcgcccgccgccggcctcccacgccacgctgaccgtgggcgccgtc
gacgccaccttctccgagatcggcgccgtgtccggcaaaggcgcacaggcgcgccgcgcc
gcgctccttgccaccctgttcgccgccgcgaccgaagccgagcagacgttcctgctgcga
ctgctcggcggcgaactgcgccagggcgcgctggccggaatcatggccgacgcggtggcc
aaggccgccgggagcccggcggccgcggtgcagcgggccgcgatgctgggcggggacctg
cccgcggtcgcggcggcggccctgtccggcgaacccgccgccctgcaggccttcaccctg
cgcgtcggccgcccggtcggcccgatgctggcgcagacggcgcccagtgtggccgacgcg
atcgaacgccacggcgggcgggcgattttcgaggccaagctcgacggggcgcgagtgcag
atccaccgctccggcgaccaggtcaccgtctacacccgaagcctcgacgatgtcaccgcc
cgggtgcccgaggtggtggaggcgacgctggcgctgccggtgaacgacctgatcgccgac
ggcgaggcgatcgcgctgcggcccgacaaccggccgcagcgcttccaggtcaccgcctcc
aggttcggccgctcggtcgatgtcgccgcggccgttgctgcgcaaccactttcggtgttc
ttcttcgacatcctgcaccgcgacggcgtcgacctgctcgacgcgccgaccaccgaccgg
ctggcggccctggacgcgttggtgccgtccgcgcagcgggtcgatcggctgctcacctcc
gaccccgtggaggccggcgccttcctggacgcgacgctggccgccggccacgagggtgtg
atggccaaggcgccggacgcgcagtatcaggccggccgccgcggggcgggctggctgaag
gtcaagccggtgcacaccctggacctggtggtgctggccgtggaatgggggtcggggcgc
cgccgcggcaagctttccaacatccatctgggcgcccgcgacccggacagcggcgaattc
gtcatggtgggaaagactttcaagggcatgaccgacgccatgctggactggcagaccgcc
cggttcaccgacctggcgatcggcgggacggacggctacgtcgtgcacgtaagacccgag
caggtggtcgaggtggccctggacggcgtgcagaaatcgtcgcgctaccccggcgggctg
gcgctgcggttcgcccgcgtggtgcggtatcgcgacgacaagggccccgccgaggccgac
accatcgacgccgtgcgcgcgctgtactag

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