Micromonospora sp. B006: MicB006_0497
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Entry
MicB006_0497 CDS
T05583
Name
(GenBank) ATP-dependent DNA ligase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
micb
Micromonospora sp. B006
Pathway
micb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
micb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MicB006_0497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
micb03400
]
MicB006_0497
Enzymes [BR:
micb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MicB006_0497
DNA repair and recombination proteins [BR:
micb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MicB006_0497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AXO32804
UniProt:
A0A385ALD8
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All DBs
Position
498300..499214
Genome browser
AA seq
304 aa
AA seq
DB search
MPADRLKVEVEGRSLELSNLDKVLFPQAGFTKGEVIDYYTRIAPVLLPHLRDRALTRIRF
PNGVDGGSFFEKNAPAATPGWVRTENLPAPGSSKGRETIDYVVCDELPTLVWLANLAALE
LHTPQWKVGAHPDMMVVDLDPGAPAALKQCCQVAVLMRDRLASDGISSFPKTSGKKGMQL
CCPIAGTQDAELVSDYAKRIAQELEKAHPKLVVSKMAKNLRPGKVFIDWSQNNAAKTTVA
PYSLRAQSVPAVSTPLTWDEVEAGAAGKRPSSRPYTAGEVLKRVEKQGDLLAPLLDGGPE
LPTG
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgaccggctcaaggtcgaggtcgaggggcgctcgctggagctgtccaacctg
gacaaggtgctgttcccgcaggccggcttcaccaagggcgaggtcatcgactactacacc
cggatcgcccccgtcctgctgccgcacctgcgtgaccgcgcgctgacccggatccggttc
cccaacggcgtcgacggcggctcgttcttcgagaagaacgcgcccgccgcgacccccggc
tgggtacgcaccgagaacctgcccgcccccgggtcgagcaaagggcgggagaccatcgac
tacgtggtctgcgacgagctgcccacgctcgtgtggctggccaacctggccgcgctggag
ttgcacactccgcagtggaaggtcggcgcgcacccggacatgatggtggtcgatctggac
ccgggcgccccggcggcgctcaagcagtgctgccaggtggcggtgctgatgcgcgaccgg
ctggcttccgacgggatttcctcgttcccgaagacgtcggggaagaagggcatgcagctc
tgctgcccgatcgccggcacgcaggacgccgaactcgtctccgactacgccaagcggatc
gcgcaggaactggagaaggcacacccgaagctggtcgtgtcgaagatggcgaagaacctg
cgtcccggcaaggtcttcatcgactggagccagaacaacgcggcgaagacgacagtcgcg
ccgtactcgctgcgggcccagtcggtgccggccgtgtcgacgccgctgacctgggacgag
gtggaggccggggcggccgggaagcggccgtcgtcccggccgtacaccgccggtgaggtg
ctcaagcgagtggagaagcagggcgacctgctggcgccgctgctcgacggcggtcccgag
ctgccgaccggctga
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