Microbacterium sp. SGAir0570: C1N74_07020
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Entry
C1N74_07020 CDS
T07987
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mics
Microbacterium sp. SGAir0570
Pathway
mics03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mics00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C1N74_07020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mics03400
]
C1N74_07020
Enzymes [BR:
mics01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C1N74_07020
DNA repair and recombination proteins [BR:
mics03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C1N74_07020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QCR40195
LinkDB
All DBs
Position
complement(1485179..1487644)
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AA seq
821 aa
AA seq
DB search
MAGEQTVRVDGRRLRLSNLDKVLYPRTGTTKGEVIDYFSRIAPLMLPHLDRRPVTRKRWP
EGVEQPDFFAKALEPGAPSWLPRMPIDHSSGSKDYPLVEEVASLVYLAQVASLELHVPQW
RFTDAGERGSPDRLVLDLDPGPGVGLAECAEVARWVRSILSDMGMELFPVTSGSKGIHLY
APLAGAKTSDQASAFAKELARALEADHPDLVISQMTRSARTGKVFLDWSQNNGSKTTIAP
YSLRGRDEPTVAAPRTWDELDDPDLRHLRFDEMLERADDVGDLLAALAPRRTAPLAPYLA
KRSADRTPEPMPDAVSGAAAGVAGTAPAGKPRFVVQEHHARRLHYDLRLERDGVLVSWAV
PRGIPETTDRNHLAVMTEPHPMEYLTFHGEIPAGEYGAGTMTIWDTGVYDLEKWREDEII
FTLRGTTGGTAHDARLVLIRTGGSGEKSQWLLHRMKTEAPGSASSASAGSARPAASARPP
ASAHPEAETGASTIAAGPVSPMLAVSSSRGAARATAERWGPWVEFKWDGVRAIAYWDGER
MRLHARSGTDITARYPELTGEDADLGLGETPLVLDGEIVALDGAGRPSFPLLQNRMHLTK
ARDIARERDRTPADLFVFDMLRHGDRDVTTLPLRERRRLLESATAHAKPPLTVPPVTDDL
DAALTVARELDLEGAVVKDPSSRYRPGVRSEEWLKVKLTRTQDVVIGAIRPGKGARRGSI
GSLLLGIPDDDGALHYAGRVGSGFSDAELARLTAALEPLRSGENPFVGIPAADASDARWV
RPELVGEVEFAEFTPGGILRHARWRGLRPDRTPGDVRREES
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagagcagacggtccgggtcgacggccgacgtctgcggctgtcgaacctcgac
aaggtgctgtaccccagaacgggcaccaccaagggcgaggtgatcgactacttctcgcgc
atcgcgcccctgatgctcccccacctcgaccggcgcccggtgacgcgcaaacgctggccc
gagggcgtcgaacagcccgacttcttcgcgaaagccctcgagcccggcgctccctcatgg
cttccccgcatgccgatcgaccattccagcggatcgaaggactaccccctcgtcgaagag
gtggcctcgctcgtctacctcgcgcaggtcgcgagcctcgaactgcacgtcccgcagtgg
cgcttcaccgacgccggcgagcgcggctctcccgaccggctcgtcctcgacctcgatccg
ggccccggtgtcgggctggccgagtgcgccgaggtggcgcggtgggtgcgcagcatcctc
tcggacatgggaatggagttgtttcccgtcacgagcggaagcaagggcatccatctgtac
gctccgctcgccggcgcgaagacgagcgatcaggcctcggcgttcgcgaaggagctcgcc
cgcgctctcgaggccgaccaccccgacctcgtcatcagtcagatgacccggagcgcccgc
accggcaaggtcttcctcgactggagccagaacaacggttcgaagaccaccatcgcgccc
tattcgctgcgcggccgcgatgagccgaccgtcgctgcaccgcgaacgtgggacgagctc
gacgatccggacctccgccacctccgcttcgacgagatgctcgagcgcgcagacgacgtc
ggcgacctgctcgcggcgctcgcaccccggcgaacggcaccgctggcgccgtacctcgcg
aagcggtccgcggaccgcacgcccgagcccatgcccgacgccgtgtcgggtgcggcggcg
ggcgttgcgggtaccgcaccagcgggcaagccccgcttcgtcgtgcaggagcaccatgcc
cggcggctgcactacgacctgcgcctggagcgggacggagtgctggtcagctgggccgtg
ccccgcggcatccccgagacgaccgaccgcaaccatctcgccgtgatgaccgagccgcat
ccgatggagtacctgaccttccacggcgagatccccgccggcgagtacggtgcgggcacc
atgacgatctgggacaccggcgtctacgacctcgagaagtggcgcgaggacgagatcatc
ttcaccctccggggcaccaccggcggaaccgcgcacgacgcgcgcctcgtgctcatccgc
accggcgggtcgggcgagaagtcgcagtggctcctgcaccggatgaagaccgaggctccg
gggtcggcctcctccgcatccgcggggtctgcgcggccggcggcatccgcgcggccgccg
gcatctgctcatcccgaggccgagacgggcgcatcgacgatcgcggcgggaccggtgtcg
cccatgctggccgtctcatcgtcgcgtggagccgcccgcgcgacggcggaacgctggggg
ccgtgggtcgagttcaagtgggatggcgtccgggcgatcgcgtactgggacggcgagcgg
atgcggttgcacgcccgcagcggcaccgacatcacggcccgctaccccgagctcacgggc
gaggatgcggatctgggactcggcgagaccccccttgtgctcgacggcgagatcgtcgcg
ctcgacggggcgggacgcccgagcttcccgctcctgcagaaccggatgcacctcacgaag
gcccgcgacatcgcgcgggagcgcgaccgcacgcccgccgatctcttcgtgttcgacatg
ctgcggcacggcgaccgcgacgtcacgaccctgccgttgcgcgagcgccgaagactgctc
gagtccgcgacggcgcacgcgaaaccgccgctcacggtgccgcccgtcaccgacgacctc
gacgccgcgctgaccgtggctcgggagctcgatctcgagggtgccgtcgtgaaagatccg
tcatcccgttaccgccccggcgttcgatcggaggaatggctcaaggtcaagctcacccgc
acgcaggacgtcgtcatcggggctatcaggccgggcaagggtgcacgccgcggcagcatc
gggtcgctgctgctcggcatccccgacgacgacggcgctctgcactacgccgggcgcgtc
ggatccgggttctccgatgccgaactcgcgcggctgaccgccgccctcgagcctctccgc
tcgggcgagaacccgttcgtgggcatccccgcagccgacgcctccgacgcccggtgggtt
cgacccgagctcgtcggcgaggtcgagttcgccgagttcacgccgggcggcatcctgcgc
cacgctcgctggcggggcctgcggcctgaccggacccccggcgacgtccgccgagaggag
agctag
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