Microbacterium sp. BH-3-3-3: BJP65_15745
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Entry
BJP65_15745 CDS
T04827
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mih
Microbacterium sp. BH-3-3-3
Pathway
mih03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJP65_15745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mih03400
]
BJP65_15745
Enzymes [BR:
mih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJP65_15745
DNA repair and recombination proteins [BR:
mih03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJP65_15745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AOX47051
LinkDB
All DBs
Position
complement(3424447..3426942)
Genome browser
AA seq
831 aa
AA seq
DB search
MTEQTVRIGGRRLRLSNLDKVLYPETGTTKGEVIDYYSRIAPRLLPHVRDRPVTRKRWPD
GVGTDADPGEPFFAKALEPGAPAWVRRLPIDHSSGAKDYPLVDDLPTVVYLAQVASLELH
VPQWRFSADGERLHPDRLVLDLDPGPGVGLAECAEVARWARVILQDIGLDPLPVTSGSKG
IHLYAHLDGRQSSDAASAIAKELARAIEADHPDLVVSQMSKSARPGKVFIDWSQNNGSKT
TIAPYSLRGRSHPTVAAPRTWEELDDPGLRHLLFTEVLDRPGDPLAPVERDAGPLRAYIS
KRTAGATPEPVPDAPHADAAPDGLPRFVIQEHHATRLHWDVRLEHDGVLVSWAVPKGVPP
TTAKNSLAVMTEDHPMQYLDFAGEIPRGEYGAGIMTVWDTGTYELEKWRDDEVIATLEGG
PDGPLGRVRLALIRTEGAGEKSQWLLHRMKTDAEGRPQSDGDPVVALDHGRADRVAVTVT
ATESDEAPEPEPAPEPAPGTSTPPAPPSPAQLRPMLSTAATAGIARAAADRWGEPWVEMK
WDGIRGIGLWDGERLRLRSRNGNDLTAAYPELTTVDLGLGPEPAVVDGEIVALDAQGRPS
FPLLQRRMNLAQPREIEREARRTPVQLYLFDVLSVGERDVAALPLTERRGILEALAQDAG
APVVVPPVFDDVDAAVATSGRFGLEGVVVKDPGSVYRRGERSEQWLKVKHSRTQEVVIGG
VRPGKGNRAGTIGSLLVGVPGPDGLQYAGRVGSGFGDQTLARLGEMLAALGSDTDPFVGV
PAADARDALWVRPELVAEVEFAEFTPGGILRQARWRGLRPDKDPGEVVREV
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgacggagcagacggtgcgcatcggcggacgccgcctgcgtctgtcgaacctcgacaag
gtgctgtaccccgagaccgggaccaccaagggcgaggtgatcgactactactcccgcatc
gccccgcgcctgctcccccacgtgcgagatcgtcctgtcacgcgcaagcgctggcccgac
ggggtcggcaccgacgccgacccgggcgagcccttcttcgccaaggccctcgaacccgga
gcgccggcctgggtgcggcgcctgccgatcgaccactcctcgggcgccaaggactacccc
ctcgtcgacgatctgcccaccgtcgtctacctggcgcaggtcgcgagcctcgagctgcac
gtgccccagtggcggttctctgccgacggcgagaggctccaccccgaccgattggtgctc
gacctcgaccccggacccggcgtcggcctggccgagtgcgccgaggtggcccggtgggca
cgcgtcatcctgcaggacatcggtctcgaccccctgccggtgacgagcggaagcaagggc
atccacctctacgcgcacctcgacggccgccaatcgagtgatgccgccagcgcgatcgcg
aaagaactcgcccgggcgatcgaagccgaccaccccgacctggtggtcagccagatgtcg
aagtccgcgcgccccggcaaggtcttcatcgactggagccagaacaacggctcgaagacc
acgatcgcgccgtactcgctgcggggacgatcgcaccccaccgtcgccgccccgcgcacg
tgggaggagctcgacgacccgggcctacgtcacctgctgttcaccgaggtgctggatcgc
cccggcgatccgctcgcgccggtcgagcgcgacgcgggaccccttcgtgcgtacatctcc
aagcgcaccgcgggtgcgacccccgagcccgtgcccgatgccccgcacgccgacgccgca
cccgacggtcttccccgcttcgtcatccaagagcaccacgccacccgcctgcactgggac
gtacgactcgaacacgatggggtgctggtcagctgggccgtcccgaagggagtccccccg
acgacggcgaagaacagcctcgcggtcatgaccgaagaccaccccatgcagtacctcgac
ttcgccggcgagatcccccgcggcgagtacggcgccggcatcatgacggtgtgggacacg
ggcacctacgagctcgagaaatggcgcgacgacgaggtcatcgccaccctcgagggcggg
cccgacgggccgctcggccgagtgcgtctggccctcatccgcaccgagggcgcgggcgag
aagtcgcagtggctgctgcaccggatgaagacggatgccgagggtcggccgcagagtgat
ggcgacccggtggtggccctcgatcacggccgcgcggatcgggtcgcggtgacggtgact
gcgacggagagcgacgaggcgcccgagccggagcccgcgcccgagccggcgcccggcacc
tcgacgccgccggctcccccgagtcccgcgcagctgcgccccatgctgtccaccgccgcc
accgccgggatcgcccgggccgccgccgaccgctggggcgagccgtgggtcgagatgaag
tgggacggcatccgcggaatcggcctctgggacggcgagcggctgcgccttcgatcgcgc
aacggcaacgacctcaccgccgcctaccccgaactcacgaccgtcgacctcgggctcggc
ccggagcccgcggtcgtcgacggcgagatcgtcgcgctcgacgcgcagggacgcccgagc
ttccccctgctgcaaagacggatgaacctcgcgcagccccgcgagatcgagcgcgaagcc
cggcgcacaccggtgcagctgtacctgttcgacgtactttcggtgggcgagcgcgacgtc
gccgccctgccgctgaccgagcggcgcggcatcctggaggcactggcgcaggatgccggg
gcccccgtcgtcgtgccgcccgtgttcgacgacgtcgacgccgccgtcgcgacgagcggc
cggttcgggctcgagggcgtcgtggtcaaggaccccggttcggtataccgccgcggcgag
cgttcggaacagtggctcaaggtgaagcactcgcgtacgcaggaggtcgtgatcggcggc
gtccgcccgggcaagggcaaccgcgcgggcacgatcgggtcgctcctggtcggtgtcccc
ggaccggacggcctgcagtacgccggccgcgtcggctcgggtttcggtgaccagaccttg
gccagactcggcgagatgctcgccgcgctgggaagcgacaccgacccgttcgtgggggtg
cccgccgccgatgcccgcgacgcgctgtgggtgcggcccgaactcgtcgccgaggtggag
ttcgcggagttcacccccggcggcatcctgcgccaggcacgctggcggggcctgcggccc
gacaaggatccgggcgaggtggtgcgggaggtctga
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