Mangifera indica (mango): 123229251
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Entry
123229251 CDS
T07684
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
minc
Mangifera indica (mango)
Pathway
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123229251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
minc03041
]
123229251
Enzymes [BR:
minc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123229251
Spliceosome [BR:
minc03041
]
Complex A
U2 snRNP components
U2 related factors
123229251
Complex B
123229251
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
123229251
NCBI-ProteinID:
XP_044510847
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All DBs
Position
11:1101457..1106061
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AA seq
1151 aa
AA seq
DB search
MEETKHELKRSHRERDRDKEKERNGERHRDKRDRESRRSEREKSTDSDDKYDKEKERDKH
RDKEKDRRNMDEGKDRSSDRKRDRGRDREDRDREKDREKEKEREEKRERAREKDREKERE
KRERDREDRERERERRERDKEERDRERDREREKRERDRDRERERRLRDREKRRKVDSDDS
DEDKEHNRKRHRRGEDDYKERVHEQSVRSNRHWDDSDDSPRKRDVEDDLEKKEKKTREEE
LVDEQQKLDEEMEKRRRRVQEWQELKRKKEESEREKCGEENVDEPKAGRNWTLDGEDSDD
EEVPQTGKSETDMDADEGADPPDKQVRDEMVVDSESGNAAPVLQNGVASEEEIDPLDAFM
NSMVLPEVEKLNNAVELSVVDANGVDPKKKDRKGDRSNGLQPKKSSNKSLGRIIPGEDSD
SDYEDLENDEEMVEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYKPFRKNFYIEVKEISRM
TPEEVVAYRKQLELKIHGKDVPKPVRTWHQTGLTSKIMETIKKLNFEKPMPIQAQALPVI
MSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVIAGDGPVGLIMAPTRELVQQIHSDIK
KFAKVMGIGCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL
VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR
SVVNKDITQLVEVRPESERFLRLLELLGEWYEKGKILIFVQSQEKCDVLFKDLLRHGYPC
LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDVPNHYEDYVHR
VGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQ
AHGSGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSEDEDEGVRKSGGDISQQDA
LAKIAAIAAATKASASMPTPISAAQMLPNAGLPIALPGVLGLPIPGAVAVVPGTGLSVVP
NDGAARAAALAAAINLQHNLAKIQADVMPEHYEAELEINDFPQNARWKVTHKETLGPISE
WTGAAITTRGQFFPPSRVAGPGERKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLP
GGAQPGRYSVV
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaacaaaacatgaattgaagaggagtcaccgggaacgtgacagggacaaagaa
aaggagagaaatggagagagacatagggataagagagacagggaaagtaggcgttctgag
agagagaaaagcactgattctgatgacaagtatgacaaagagaaagagagagataagcat
agagacaaggagaaagaccgcaggaatatggatgagggaaaagatagaagcagtgatagg
aagagagacagaggcagggatagagaagacagggacagagagaaggatagggagaaagag
aaagaaagagaggagaagagggagagggcaagggagaaggatcgggagaaggagagagag
aagagggaacgtgaccgtgaagatagagagagagaaagggagaggagagaacgagacaag
gaagaacgagatagggagagagatagagagagggagaagagagagcgtgatagagataga
gagagggagaggagattgagggaccgggagaagcgtcgaaaagttgatagtgatgatagt
gatgaagacaaggaacacaatagaaaacggcataggagaggtgaagatgattacaaggag
agagtgcatgagcagagtgttagatcaaacaggcattgggatgacagtgatgatagccca
aggaaaagagatgttgaagatgatttggaaaagaaagagaagaaaacccgagaagaagag
ctagtagatgaacaacagaaattggatgaggaaatggaaaagcggaggaggagagttcag
gaatggcaagagctgaagaggaagaaggaagaatccgagagagaaaaatgtggggaagag
aatgttgatgaacccaaggctggcaggaactggacccttgatggagaagattctgatgat
gaagaagtaccccaaactgggaaatctgagacagacatggatgctgatgaaggtgctgat
cctcctgataaacaagttagagatgaaatggtggtagactctgagagtgggaatgctgca
cctgttttgcaaaatggggttgccagtgaggaagaaattgatccacttgatgcttttatg
aactctatggttttacctgaagttgagaagctaaacaatgctgtggaattgtcagtggtg
gatgctaatggggtggacccaaagaagaaggatcgaaagggtgataggagtaatggttta
cagccaaagaaaagttcaaataaatctcttgggagaataattcctggtgaagattctgat
tcagattatgaggacctcgagaatgatgaggaaatggttgaagatgaagatgatgatgaa
tttatgaagagagtaaaaaagacaaaagctgagaaattatctatcgttgaccactcaaag
attgattacaaacctttcaggaaaaatttctatattgaagtgaaggaaatttcaagaatg
actcctgaagaggttgttgcatacaggaaacaactggaattgaaaatacatggaaaggat
gtcccaaaaccagtcagaacctggcaccaaactggacttacaagcaaaattatggagaca
ataaagaagcttaattttgaaaagcctatgccaatccaagctcaggcactacccgtaatt
atgagtgggcgagattgcataggcattgcaaaaaccgggtccggaaagacccttgccttt
gtgctgccgatgttgaggcatatcaaggatcagccacctgtgatagctggcgatggccca
gttggacttataatggcacctacaagggagcttgtccagcagatccacagtgatatcaag
aagtttgccaaggtaatgggtatcggatgtgtgcctgtctatggtggttctggtgttgct
cagcaaattagtgaattaaaacgagggactgaaattgttgtctgtactccaggtcgaatg
attgatatactttgcacaagtggagggaagattaccaatttgagaagagtcacatatttg
gtcatggatgaagctgatagaatgtttgacatgggttttgaacctcagatcactcgaatt
gttcagaatattaggccagatcgccaaactgtactattttctgctactttccctcgtcag
gttgaaattttggctcgcaaggttttgaacaaacctgtggagatacaagttggtgggagg
agtgttgtaaacaaagatataacacaactggttgaagtgaggccagaaagtgagagattt
ttaagattgttagaactactgggtgaatggtatgaaaagggaaaaattttgatatttgtc
caatcacaggaaaaatgtgatgttttgtttaaggatttgcttagacatggttatccatgt
ctttcacttcatggggccaaggatcagacggaccgtgagtccactatttctgatttcaag
agcaatgtgtgcaatttgttgattgctaccagtgttgcagctagaggtttagatgtaaag
gaacttgaattagtgataaactttgatgttccaaaccactatgaagattatgtgcaccga
gttggtaggacaggccgagctggtcgaaaaggatgtgccattacatttatctctgaggag
gatgcaagatatgcaccagatcttgtaaaggcattggaactgtccgagcaagttgttcct
gatgatctgaaagctcttgctgatagtttcatggcaaaagtgaatcagggacttgagcaa
gcccatggatcaggttatggtggaagtggctttaaatttaatgaagaggaggatgagaag
aggaaagctgcaaagaaagcacaggcgaaagaatatggctttgaggaagacaagtcagat
tcagaagacgaagatgaaggggtgcggaagtctggtggtgacatctcacaacaagatgcg
cttgctaagattgccgccattgctgctgccacgaaagcctcagcttcaatgccaactcct
atctcagctgcacaaatgcttcctaatgctggactacccattgctctgccaggtgttctt
ggcctaccaatacctggagcagtggcggttgttcctggtaccgggctgtctgtggtcccc
aatgatggggcagctcgggcagcggcattggcagctgccatcaacctgcagcataatttg
gcaaagattcaagctgatgttatgcctgaacactatgaagcagaactggagatcaatgat
tttccccagaatgctcgatggaaagttactcacaaggagacattgggtccgatttctgaa
tggactggagctgccattaccaccaggggtcaattttttcctccaagccgggttgcagga
ccaggggaacgcaaactttacttgtttattgagggccctaccgaacagtctgtcaagaga
gctaaagcagaattaaaacgtgttttagaagacttcacaaatcaggcattatcacttcca
ggtggagctcaaccaggcagatactcagttgtataa
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