KEGG   Mycobacterium paraintracellulare: OCQ_09380Help
Entry
OCQ_09380         CDS       T01755                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mir  Mycobacterium paraintracellulare
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mir00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    OCQ_09380
Enzymes [BR:mir01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OCQ_09380
DNA repair and recombination proteins [BR:mir03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     OCQ_09380
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
925761..928028
Genome map
AA seq 755 aa AA seqDB search
MSPTAGPRVKLTNAEKVLYPATGTTKSDIFDYYTRIAEVMIPHIAGRPATRKRWPNGVEQ
ESFFEKQLAASAPDWLPRASVTHRSGTTTYPIIDDPTGLAWIAQQAALEVHVPQWRFVAE
WTRSRAEELKPGPATRLVFDLDPGEGVTMAQMSKVARAVRDLIAGIGLRTFPLTSGSKGL
HLYAPLDEPVSSKGATVLAKRVAQQLEKTMPKLVTSTMTKSLRAGKIFLDWSQNNGSKTT
IAPYSLRGREHPTVAAPRTWDELDDPSLRQLRYDEVLSRVARDGDLLAELDEDAPVPDRL
TKYRSMRDASKTPEPVPAAKPAVGQGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTSVNHLAVHTEDHPLEYGGFEGVIPKGEYGAGKVIIWDSGTYDAEKFLDDEVIVNLH
GSKISGRYALIQTNGDQWLAHRMKDQKVFEFDTIAPMLATHGSVTALKAGQWAFEGKWDG
YRLLIEADHGAFRVRSRRGREVTQEYRELRWLADDLADHHVVLDGEAVVLDSSGVPNFHE
MQNRGRGSRVEFWAFDLLYLDGRSLLRARYRDRRKLLEMLAAGSRLIVPDLLPGDGREAL
EHSAERGWEGVIAKKRDSTYQPGRRSSSWIKDKHWNTQEVVIGGWKAGEGGRSSGIGSLL
MGIPTAGGLHFAGRVGTGFTDRDLANLKKTLAPLHTDESPFDPPLPRSEARGVTYVRPEL
VGEVRYSEWTPDDRLRQSSWRGLRPDKEASEVVRE
NT seq 2268 nt NT seq  +upstreamnt  +downstreamnt
atgagtccgacggcggggccacgggtcaagctgaccaacgccgaaaaagtgctgtatccc
gccaccggaaccaccaagagcgacatcttcgactactacacgcggatcgccgaggtgatg
atcccgcacatcgccgggcgtccggccacgcgcaaacgctggcccaacggcgtcgaacag
gaatccttcttcgagaagcaactcgccgcgtcggcacccgactggctgccgcgcgccagc
gtgacccatcgatccggaacgacgacctatccgatcatcgacgaccccaccggcctggcc
tggatcgcccaacaggcggcgttggaggttcacgttccgcagtggcggttcgtcgccgag
tggacccgcagccgggccgaagaactcaagcccgggccggcgacgcgattggtgttcgac
ctcgaccccggcgaaggcgtgacgatggcgcagatgtccaaggtggcgcgcgccgtgcgc
gacctgatcgccgggatcgggctgagaaccttcccgctcaccagcggcagcaagggactg
catctgtatgcgccgctcgacgagccggtgagcagcaaaggcgccacggtgttagccaaa
cgcgttgcgcaacagctggaaaagacgatgcccaagcttgtcacgtcgaccatgaccaag
agcctgcgggcggggaagatctttttggactggagccagaacaacggctccaagacgacc
atcgcaccgtattccctgcgcggacgcgaacatcccaccgtcgcggcgccgcgcacctgg
gacgaactcgacgacccgtcgctgcgccagctgcggtatgacgaagtgctgtcccgggtc
gcgcgcgacggcgacctgcttgcagagctggacgaggacgctccggtgccggatcggttg
accaagtaccgcagcatgcgcgacgcgtcgaaaacccccgagccggttccggcggcgaaa
cccgctgtcggccaaggaaataccttcgtcatccaggaacaccacgcgcgacgcctgcac
tacgacttccggctggagcgcgacggcgtgctggtgtcctgggcggtgcccaaaaacctg
cccgaaaccacgtcggtgaaccacctggcggtccacaccgaggaccatccgctggaatac
ggcgggttcgaaggcgtcatccccaagggcgaatacggcgcgggcaaggtgatcatctgg
gactccggaacctacgacgccgaaaagttccttgacgacgaggtcatcgtcaacctgcac
ggcagcaagatctccggacgctacgcgctgattcaaaccaatggcgaccagtggttggca
catcggatgaaggaccagaaggtcttcgagttcgacaccatcgcacccatgctggccacc
cacggttcggtgacggccctgaaggcaggtcagtgggcgttcgagggcaaatgggacggt
taccggcttctgatcgaggccgaccacggtgcctttcgggtgcggtcgcgacgcggtcgc
gaagtcacccaggaataccgcgaactgcgttggctggcagacgatctcgccgaccatcac
gtggtgctcgacggggaggccgtcgtcctggactcctccggggtgcccaactttcacgag
atgcaaaaccgtggacggggctcacgggtcgaattctgggcgttcgacctgctctacctc
gacggccgctcgttgctgcgggcccgctaccgggatcggcgaaaactgctggaaatgttg
gccgccggcagcaggctcatcgtccccgacctactgcccggcgacggcagggaggcgctg
gagcactccgcggagcgcggttgggagggggtgatcgccaagaagcgcgactccacctat
cagccgggccgccgctcgtcgtcgtggatcaaggacaagcactggaacacccaggaagtc
gtcatcggcggttggaaagccggggaaggcggacgcagcagcggcatcggctcactgctg
atgggtatcccaaccgcgggcggactgcacttcgccgggcgcgtcggcaccgggttcacc
gaccgcgacctggcaaacttgaagaagacgctggcaccgctgcacaccgacgaatccccc
tttgacccaccgcttcccaggagcgaagcgcgcggcgtgacgtatgtgcggccggagctg
gtcggggaggtgcgctacagcgagtggaccccggatgaccggttacgccaatcgagttgg
cgcggactacgaccggacaaggaggcgagtgaggtggtgcgcgagtga

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