Mycobacterium paraintracellulare: OCQ_30560
Help
Entry
OCQ_30560 CDS
T01755
Name
(GenBank) putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mir
Mycobacterium paraintracellulare
Pathway
mir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OCQ_30560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mir03400
]
OCQ_30560
Enzymes [BR:
mir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OCQ_30560
DNA repair and recombination proteins [BR:
mir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OCQ_30560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Alpha_TIF
Motif
Other DBs
NCBI-ProteinID:
AFC54568
UniProt:
A0A7I7TU23
LinkDB
All DBs
Position
3246517..3247407
Genome browser
AA seq
296 aa
AA seq
DB search
MARVDVEITHPDRVLFPADGITKRDLAAYYDQVADTMLTHLRGRALNVQRYPRGIAETGF
IQQDFADSLPDWMSSVRVAKEGGTVEHPVVERPEALRWLANQSCITLHMWQSRRARLDHP
DRLVFDLDPSDGDFAVVRATARATAGVLGDLGLACYVQTTGSRGLHVVAPLRADTDFDTA
RQFARDVSEVVAADDPAHRTVEARKDKRDGRVYLDIMRNAYAQTAVAPYSVRARNGAPVA
TPLEWDELDAGRLRADRFTIRDVPKRLAGQPDPWAHMSRHARSLAGPLRRLARLRA
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgtcgacgtcgagatcacccacccggaccgcgtcctgtttcccgccgacggg
atcacgaaacgcgatctcgccgcctattacgaccaggtggccgacaccatgttgacgcac
ctgcggggccgggccctcaacgtgcagcgctatccccgcggcatcgccgaaacagggttc
atccagcaggatttcgccgattcgctaccagactggatgagcagtgtccgggtggccaag
gagggcggcaccgtagagcatccggtcgtcgaacggccggaggcgctgcgctggctggcc
aatcaaagctgcatcaccctgcacatgtggcagtcgcgccgggcccggctggaccacccg
gaccgactcgtcttcgatctcgacccgtccgacggcgacttcgccgtggtgcgagcgacc
gcacgcgccaccgccggggtgctcggggacctgggcctggcgtgctacgtccagaccacc
ggctcgcgggggctgcacgtggtcgcccccttgcgcgccgacaccgatttcgacaccgcc
cggcagttcgcccgtgacgtcagcgaagtggtcgccgcggacgatcccgcgcatcgcacc
gtcgaggctcgcaaggacaagcgcgacgggcgggtatacctcgacatcatgcgaaacgcc
tacgcgcagacggcggttgcgccgtattcggttcgggcccgcaacggcgcaccggtagcc
acaccgctggaatgggacgagctggacgccgggcggttgcgggccgaccggttcaccatc
cgcgacgtacccaaacggcttgccggacaaccggatccgtgggcgcacatgtcgcggcac
gcccgctcactggccggcccgctgcgccgattggcgaggctacgtgcctga
DBGET
integrated database retrieval system
