Micromonas commoda: MICPUN_98164
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Entry
MICPUN_98164 CDS
T02695
Name
(RefSeq) predicted protein
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
mis
Micromonas commoda
Pathway
mis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MICPUN_98164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_98164
Enzymes [BR:
mis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MICPUN_98164
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
MICPUN_98164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_19
AAA_22
ATPase
AAA_16
ResIII
Motif
Other DBs
NCBI-GeneID:
8247910
NCBI-ProteinID:
XP_002509257
JGI:
MicpuN3_98164
UniProt:
C1FJ24
LinkDB
All DBs
Position
12:complement(join(427649..428092,428156..428327,428406..429499,429602..430321))
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AA seq
809 aa
AA seq
DB search
MRREVLECIENGRASVVSGATGCGKTTQVPQYVFENAVRAGRGGECSVIITQPRRLSAIA
VAERVAQERCERIGDTVGYSIRLESRQSSNTRLLFCTTGILLRRLQSDPDLRGVSHVIVD
EVHERDLLSDFLLVILRRLAARREDFRLVAMSATVNAELFKGYFERVVPGECGCVEIPGR
TFPVAEYRLEDAIEATGYVCEPDSEFALGADGKPQGGGGGGRTFNPLSGGGARRSKAMAA
TVDEEKINMELIEMLVQLIADEYEDGAILIFLPGMAEIRGLHERLASSLDDVEKRFILIP
LHSTLSSEEQRLTFSKPLPGVRKVVMATNIAETSITIDDVVFVIDSGRVRETQYDPTSRM
SSLVTAWCSRASSRQRRGRAGRVREGYCFHLYSSARESKLADFTTPEILRTPLDALCLQI
KILRLGDVREFLAQAIEPPPEGAIASALRSLAELDAIDASDELTPLGHHLAELPVDARLG
KMMLYGAMFSCLDPVLTIAAGVGFRSPFVSPMDKRDEADEAKRKIAGAGATSDHLTLVRA
YAGWIRAKARGRGFERDFLAKTFLSAQTLRQISEMRQQYVELLDQIGFLRSGTGLLGGKK
DEDDGPEQTPRGGNARGVKRGGGFKASAERALAAASVNAGNEPLVRAVICAGLFPNVAVV
ESGDGDAYLHPTSVVFGLSKFEHRFLLFHEKVKTAKVYIRDATMIGPYPLLLFGGKVAVD
HGRSQATCDGWIRFRAAPRVAVLFKALRKELDGLLMQKIATPELNMAKKSGDLVRTIVEL
LDTESEVAAEARRAMRDAEAAATRDDKEV
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgagaggtgctggagtgcatcgagaacggacgcgcgtccgtcgtgagcggcgct
accggctgcggcaagacgacgcaagtgccgcagtacgtctttgaaaacgcggtgcgagcc
ggccgcggcggcgagtgctcggtcattatcacgcagccgcgcaggctgagcgccatcgcc
gtcgccgagcgcgtcgcgcaggagcggtgcgagcgcataggcgacaccgtggggtacagc
atcaggcttgaatcgcggcagagctccaacaccaggctcctcttctgcacgacggggatc
ctcctcaggcggcttcagtcggaccccgaccttcgcggggtgtcgcacgtcatcgtcgac
gaggtgcacgagcgcgatttgctcagcgatttcctcctcgtcattctccgcaggctcgcg
gcgcggcgtgaggacttcaggctcgtcgccatgtccgccaccgtcaacgcggagctgttt
aagggttactttgagcgggtggtgcccggggagtgcggctgcgtcgagatccccggccga
accttcccggtcgccgagtaccgactggaggacgccatcgaggccaccgggtacgtgtgc
gagcccgacagcgagttcgcgctcggcgcagacggtaaacctcagggcggcgggggcggc
ggtcgcactttcaatcccctttcggggggtggcgcgagaaggagcaaagccatggccgcc
acggtggacgaggagaagataaacatggagctcatagagatgctggtgcagctcatcgcg
gatgagtacgaggatggcgcgattttgatcttcctcccgggcatggccgagatcagaggc
ttgcacgagcgtctcgcgtcttcgctggacgacgtggaaaagcgattcatactgattcca
ctgcactccaccctgtcctccgaggagcagcgcctgacgttcagcaaacccctgcccggg
gttcgtaaggttgtcatggccacgaacatcgcggagacgtccatcaccatcgacgacgtc
gtattcgtcatcgacagcggccgcgtgagggagacccagtacgacccaacatcgcgaatg
tcgtccctggtcaccgcgtggtgcagccgcgcgagcagtaggcagcgtaggggccgcgcc
ggtcgcgtccgcgaggggtactgcttccacctctactcgagcgcccgggagtcgaaactc
gccgatttcacgacgcccgagattcttcgaaccccgctggacgcgctgtgcctgcagatc
aagatccttcgactcggagacgtcagggagtttctggcgcaggccatcgagcccccgccc
gagggtgccatcgcgtccgcgctcagatcactcgcggaactggacgccatcgacgcgagc
gacgagctcacgccgctgggccaccacctcgccgagctgccagtggacgcgaggctgggc
aagatgatgctctacggcgccatgttctcgtgcctagaccccgtgctgaccatcgccgcg
ggcgtcgggttcaggtcgcccttcgtctccccgatggacaagcgggacgaggctgacgag
gcgaagaggaagatcgcgggtgccggcgccacctcggaccacctgacgctggtcagggcg
tacgcgggatggatccgcgccaaggctcgcgggcggggtttcgagcgggactttctcgca
aagacgttcctgtccgcgcagacgctgcggcagatcagcgagatgcggcagcagtacgtg
gagctcttggaccagatcgggtttcttcgctcgggaaccggtttgctcgggggtaagaag
gacgaggacgacggacccgagcaaacgccccgaggaggaaacgcgaggggtgtcaagaga
ggaggcgggtttaaagcgtcggcggagcgagcgttggcagcggcgagcgtcaacgccgga
aacgaacccctcgtgcgcgcggtgatttgcgcgggactctttcccaacgtcgccgtggtg
gagagcggcgacggcgacgcgtatttgcatcccacttcggtggtgtttggtttgtccaag
tttgagcacaggtttctgctgttccacgagaaggtcaagacggcgaaggtgtacataagg
gacgccacgatgatcgggccgtacccgctgctgctgttcggaggcaaggtggccgtggac
cacggtcggtcgcaagccacgtgcgacggatggatcaggttcagggccgcgccgagggtg
gctgtgttgttcaaagccttgaggaaggagctcgacgggctgctgatgcagaagattgcg
acgcccgagctgaacatggcgaaaaaatcgggcgacttggtgaggaccatcgtcgagctg
ctggacacggagtcggaggtggcggcggaggcgaggagggcgatgagggacgcggaggcc
gcggcgacgcgcgacgataaggaggtgtga
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