Methylomagnum ishizawai: MishRS11D_26620
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Entry
MishRS11D_26620 CDS
T07434
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
misz
Methylomagnum ishizawai
Pathway
misz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MishRS11D_26620 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
misz03400
]
MishRS11D_26620 (recD)
Enzymes [BR:
misz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MishRS11D_26620 (recD)
DNA repair and recombination proteins [BR:
misz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MishRS11D_26620 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
UvrD-helicase
Helicase_RecD
SH3_13
SLFN-g3_helicase
AAA_22
RecD_N
AAA_16
UvrD_C
nSTAND3
AAA
AAA_28
Flavi_DEAD
AAA_5
T2SSE
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
BBL75564
LinkDB
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Position
complement(2961370..2963211)
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AA seq
613 aa
AA seq
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MSAETPATKPAVPPPVPEVSPLGRQFAAYLCRLGGEDDPAVAWAVRLACLAVAGGQVCLR
LADYAGTTILPEDGTDPVELPALAEWQARLGRSRLVGPPGQFAPLILDTGSRLYLARYWN
YERKLAVRLLDLAESPAEGIDLPRLRADLDRLFAHNREIPDRQKLAAAVAVLRRFCVISG
GPGTGKTSTVVRILAALQAQAGARPLRIALAAPTGKAAARVQEAIRNQKQRLDCPDALRA
AIPDTACTLHRLLGARPDSVYFRHHRDNPLPIDVAVVDEASMIDLALMAKLVDALPEHAR
LILLGDKDQLAAVEAGSVFGDLCASQGYGLDFVARLREASGVPVASSDMFPPALSNCVAL
LTHSHRFREDSGIGALARLVNEGRPKPVLDLLNKGGHADLVFVRERGKQVQDLAERMAQG
YAAYFAAVDAEAGPRETLRAFDRFRVLTAHREGGRGARGVNRQFEERLWAQRRLWPGTRW
YAGRPVIVTRNDYDLRLFNGDIGVALFLEGELRVYFEDADGRVRGFAPGRLPEHETVYAM
TVHKSQGSEFDEVLLLLPEAASPVLDRPLVYTAITRARHKAEIRGLPAVLDGAIKSPPRP
SSGLGERLWHSGQ
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgaaacccccgccaccaaacccgccgtcccgccgcccgtgccggaggtttca
cccctgggccggcaattcgccgcctatctgtgccgtttgggcggcgaggacgatccggcg
gtggcctgggccgtgcggctggcctgtctggcggtggccgggggccaggtctgcctgcgc
ctcgccgattatgccggtaccacgatcctgcccgaggatgggaccgatccggtcgaactg
cccgccctcgccgagtggcaggcgcggctgggacgctcgcgcctggtcggcccgcccggc
cagttcgcgcccttgatcctcgatacgggttcgcgcctctatctggcccgctattggaat
tacgagcgcaaactggccgtgcggttgttggatttggccgaaagtcccgcggaaggcatc
gacctcccgcgcctccgggccgatctcgaccgcttgttcgcccataaccgggaaatcccc
gaccgccagaaattggcggcggcggtggcggtgctgcggcggttctgcgtgatttcgggg
gggccgggcaccggcaagacctcgaccgtggtgcgcatcctcgccgccttgcaagcccag
gccggggcgcggcccttgcgcatcgccctcgccgcccccaccggcaaagccgccgccagg
gtgcaggaagccatccgcaaccaaaagcaaaggctggattgccccgacgccctccgcgcc
gccatccccgacaccgcctgcaccttgcaccgcttgctgggggcgcggcccgattcggtg
tatttccgccatcatcgcgacaaccccctgcccatcgatgtggccgtggtggacgaagcc
tcgatgatcgacctcgccctgatggcgaagctggtcgatgccctgccggaacacgcccgc
ttgatcctcttgggcgacaaggaccaactcgcggcggtggaagcgggttcggtgttcggc
gacctttgcgccagccagggctatggcctggatttcgtcgcgcggctgcgcgaggcgtcg
ggcgtgccggtcgctagcagcgatatgttccccccggcgctttccaattgcgtggccctg
ctgacccatagccatcgtttccgcgaggacagcggtatcggcgccctggcccgcttggtc
aacgaaggccgccccaagcccgtgctggatttgttgaacaagggcggccatgccgatctg
gttttcgtgcgcgaacgcggcaaacaggtgcaggacttggccgagcgcatggcgcagggc
tacgccgcgtatttcgcggcggtggacgccgaggccgggccgcgggaaaccttgcgggcc
ttcgaccgcttccgcgtgctgaccgcccatcgcgagggcggacgcggggcgcggggcgtg
aaccggcaattcgaggagcggctgtgggcacagcggcggctatggcccggtacccgctgg
tatgccgggcggcccgtcatcgtcacccgcaacgattacgacctgcgcttgttcaatggc
gatatcggcgtggccttgttcctggaaggggagttgcgggtgtatttcgaggacgccgat
ggccgggtgcgcggcttcgcgccggggcggttgcccgaacatgagaccgtgtacgccatg
accgtgcataagagccagggttcggaattcgacgaggtcttgctgttgctgcccgaggcc
gcaagcccggtgttggatcggcccttggtctataccgccattacccgcgcccgccacaag
gccgaaatccgcggtttgcccgccgtgttggacggggcgatcaaaagtccgccgcgcccg
tcttcgggtttgggggaacgcttgtggcacagtggccaatga
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