Mycolicibacter sinensis: JDM601_0881
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Entry
JDM601_0881 CDS
T01512
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mjd
Mycolicibacter sinensis
Brite
KEGG Orthology (KO) [BR:
mjd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JDM601_0881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mjd03400
]
JDM601_0881
Enzymes [BR:
mjd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JDM601_0881
DNA repair and recombination proteins [BR:
mjd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JDM601_0881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Methyltransf_24
Motif
Other DBs
NCBI-ProteinID:
AEF34881
UniProt:
F5YT53
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All DBs
Position
947664..949940
Genome browser
AA seq
758 aa
AA seq
DB search
MAAQPFQTRVKLTNADKVLYPATGTTKAQVYHYYTRIAEVMLPHIAGRPVTRKRWPNGVA
QDSFFEKQLASSAPAWLPRAEVQHRSGITAYPIIDDLDGLAWIAQQAALEVHVPQWRFEA
EWTGGGRVLKPGPASRLVFDLDPGEGVSMSQLAQVARAIRDLMAELDLDTFPVTSGSKGI
HVYAALDRPVASAGAVAVAKRVAQQLESAMPKLVTATMAKKLRAGKVFVDWSQNNASKTT
IAPYSLRGRDHPTVAAPRSWAELDDPDLRQLRFDEVLERVEHDGDLLAGLDGPLEGQDRL
AVYRAKRDAGRTPEPVPAAAPAAGEGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PTTTSVNHLAVRTEDHPLEYGGFEGTIPKGEYGAGTVRIWDSGSYVTEKWQDTSEKGEVI
VVLRGDRISGRYALIRTGGDQWLAHRMKDQQTFAFTDLAPMLATHGSVSGLDPKVWAFEG
KWDGYRLLVEADRGRVRLRARSGRDVTGEYPQLQTLAAELTEHHVVLDGEVVALDAAGVP
SFAAMQNSARSTRVKFWAFDLLYLDGRPLLRAAYRDRRRLLATLAQGTGLVVKDLLAAGG
AEALEQSRRLGWEGVIAKKWDSPYQPGRRSPAWVKDKHWRTQEVVIGGWRAGEGARGGGI
GSLLMGIPEGDGLRFVGRVGTGFTERALAALKKELTPTDESPFDAPLPRADAKGVTFVRP
TLVGEVRYSERTADGRLRQPSWRGLRPDKTPDDVVSED
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacagccgttccagacccgggtgaagttgaccaacgccgacaaggtgctctac
cccgccacgggcaccaccaaggcgcaggtctaccactactacacacgtatcgcggaggtg
atgctgccgcatatcgcgggacggccggtgacccgcaaacgctggcccaacggcgtggca
caggactccttcttcgaaaagcagctcgcctcctcggcgccggcctggctgccccgcgcc
gaggtgcagcaccgctccggtatcaccgcctatccgatcatcgacgacctcgacggcctg
gcctggatcgcccagcaggccgcacttgaagtccacgtgccgcagtggcgtttcgaggct
gaatggacgggcggcggccgggtgctcaagccgggcccggcaagtcgtctggtgttcgac
ctggaccccggggagggggtgtcgatgagccagctggcccaggtggcgcgcgcgatccgc
gacctgatggccgagctggacctggacacattccccgtgaccagcggtagcaagggaata
cacgtgtacgcggctctggaccggccggttgccagcgccggggcggtcgcggtggccaaa
cgcgttgcgcaacaactcgagagcgccatgccgaagctggtgaccgcgaccatggccaaa
aagctgcgggccggaaaggttttcgtggactggagccagaacaacgcctcgaagaccacc
atcgcgccgtactcgctgcgcggccgagaccatccgacggtcgccgccccgcgcagttgg
gccgaactggatgacccagacctgcggcagctgcgctttgacgaggtgctggagcgcgtt
gagcacgacggcgatctgttggccggcctggatggacccctggaaggtcaagatcgactt
gcggtgtaccgggccaagcgtgacgcgggccgcacgcccgaaccggtgccggccgcggcg
ccggcggcaggtgagggcaacagtttcgttatccaggagcatcatgcccgccggctgcac
tacgacttccggctggagcgcgacggggtgttggtgagttgggcggtgcccaagaacctg
ccgacgacgacgtcggtcaaccatctggcggtgcgcaccgaggaccatccgctggagtac
ggcggcttcgagggcaccatccccaagggtgagtacggcgccggcacggttcgtatctgg
gattcgggcagctacgtgaccgagaagtggcaggacacgtccgaaaagggggaggtgatc
gtcgtgttgcgcggcgatcggatctcgggccgctacgcgctgatccggaccggcggagat
cagtggctggcgcaccggatgaaggatcagcagacgttcgcgttcaccgacctggccccc
atgctggccacccacggttcggtgagtgggctggacccgaaagtctgggccttcgaaggc
aagtgggacggctaccgactgctggtcgaggccgaccgcggccgggtccggttgcgggca
cgcagcgggcgcgacgtgaccggcgaatacccgcagctgcagacactggccgcagagctc
accgagcaccacgtcgtgttggacggcgaagtcgtcgcactcgatgccgccggcgtgccc
agttttgcggcgatgcagaacagcgcccgctccacccgcgtgaagttctgggccttcgac
ctgctctacctcgacgggcgtcctttgctgcgcgcggcctaccgggaccgccgccggctg
ctggcaacgcttgcccagggaaccggcttggtggtcaaagacctgctggccgccggcggc
gccgaggcactcgagcagtctcgccggctcggctgggaaggggtgatcgccaagaagtgg
gactcgccctaccagccggggcgccgctcaccggcgtgggtcaaggacaagcattggcgg
acccaggaggtggtgatcggcggctggcgcgccggcgagggtgctcggggcggggggatc
gggtcgctgttgatggggattcccgagggcgacggtctgcggttcgtgggccgggtgggc
accggcttcaccgagcgcgcactggcagcgctgaagaaggagctgacgcccaccgatgaa
tcgcccttcgatgcgccgctgcctcgcgctgatgccaagggcgttaccttcgttcgaccg
acgctggtgggggaggtgcgctacagcgagcggaccgccgacggccggctgcggcaaccg
agctggcgcggcttgcggcccgacaagacgcccgacgacgtggtgagtgaggattga
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