KEGG   Methanocaldococcus bathoardescens: JH146_1630
Entry
JH146_1630        CDS       T03253                                 
Name
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mjh  Methanocaldococcus bathoardescens
Pathway
mjh03030  DNA replication
mjh03410  Base excision repair
mjh03420  Nucleotide excision repair
mjh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mjh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    JH146_1630
   03410 Base excision repair
    JH146_1630
   03420 Nucleotide excision repair
    JH146_1630
   03430 Mismatch repair
    JH146_1630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mjh03032]
    JH146_1630
   03400 DNA repair and recombination proteins [BR:mjh03400]
    JH146_1630
Enzymes [BR:mjh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     JH146_1630
    6.5.1.6  DNA ligase (ATP or NAD+)
     JH146_1630
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     JH146_1630
DNA replication proteins [BR:mjh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    JH146_1630
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     JH146_1630
DNA repair and recombination proteins [BR:mjh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     JH146_1630
   NER (nucleotide excision repair)
    Other NER factors
     JH146_1630
   MMR (mismatch excision repair)
    Other MMR factors
     JH146_1630
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase DUF2071
Other DBs
NCBI-ProteinID: AIJ06472
UniProt: A0A076LHR0
LinkDB
Position
1587169..1588890
AA seq 573 aa
MLWKDVCEIFNKIEKTTKRLEKRDYFIKLIDMVKEKGKPEDLKKICYMAIGRVYPEYDER
ELGIGEKLLINAVTSIGINKDELLEKIKETGDIGLAIEQLKSKIKQASLLFQPLTVDEVY
ETLKRVGEIEGEGSQKKKLRLISSLFLRASPIECRYLARLILEDMRIGMNVPTILDSLSV
YFNVPKEKLEKIYAITNDIGLLSEKLLMGDLENDELKLKLFRPIKPMLAQLTPSIEEALL
EMGKAQFETKYDGARVQIHKDGDKVKIYSRRLEDVTNALPEIVEAVKKIDVDKLIVEGEC
VAIDKETGKPRPFQDILRRFRRKYDIGKMMKEINLRVYLFDILYKDGVSFIDEEFEKRRK
VLEDIVGYENDWRTERERIEEELKSDKIIDISYKLVTNNTEEAREFYNWSLSIGHEGVMI
KNLKAPYTPGSRVRTMYKFKPTLESLDVVITKAKRGMGKRKDWYGSFEICVRDDEGNLYP
VGHVGTGLTESDLEMLKEEIDKIIIRDLGEEVEVEPKIVIEVAYEEIQKSDKYPCGYALR
FPRVVRFRFDKGKDDINTIEDVERIYEIQRGRK
NT seq 1722 nt   +upstreamnt  +downstreamnt
atgctttggaaagatgtttgtgagatatttaataaaattgaaaaaactacaaaaagatta
gaaaagagggattactttataaaattaattgacatggttaaagagaaaggtaagccagag
gatttaaaaaagatttgttatatggctataggaagagtttatccagaatatgatgagaga
gaattaggaattggagaaaaacttttaataaatgcggttacttccataggtattaacaaa
gatgagctattagaaaaaattaaagaaacaggggatatagggttagctatagagcaatta
aaatcaaaaattaaacaggcatctctattatttcagccattgactgttgatgaggtttat
gaaactttaaagagggttggagagatagaaggagagggttctcaaaagaaaaagttgaga
ttaataagtagtttatttcttagagcttcaccaatagagtgtagatatttggcaaggtta
attttggaagatatgagaatagggatgaacgtcccaacaatattggattcactatcagtt
tattttaatgtcccaaaagaaaaattggagaagatatatgctataaccaatgatattggg
cttctatctgagaaattactaatgggagatttggaaaatgatgagttaaaattaaaatta
tttagaccaataaagccaatgttggctcagctgactccttcaattgaagaggcgttgtta
gagatgggtaaagctcaatttgaaacaaaatatgatggagcaagagtgcagatacacaaa
gatggggataaggttaagatttatagcaggagattagaggatgttacaaatgcccttcca
gagattgttgaggcagttaaaaaaattgatgtagataagttaattgttgaaggggagtgt
gtagctattgataaagagacaggaaaaccaagaccattccaagatatacttagaaggttt
aggaggaagtatgatattggaaagatgatgaaagaaataaatttgagggtttatttattt
gatattctttataaagatggggtatcatttatagatgaagagtttgaaaagaggaggaaa
gttttagaagatattgttggttatgagaatgattggagaactgaaagagaaaggatagag
gaagagcttaagtcagataaaataattgatatatcttataaattggttacaaacaataca
gaagaagcgagagagttttacaattggagtttatctattgggcatgaaggagttatgatt
aaaaacttaaaagccccttacaccccaggaagtagagttaggactatgtataaatttaaa
ccaaccttagaaagtttagatgtggtgattacaaaagcaaaaagaggaatggggaagaga
aaggattggtatggttcatttgaaatatgtgttagagatgatgagggcaatctataccct
gttgggcatgtaggaactggattaactgaaagtgatttggaaatgttgaaggaggagatt
gataaaataattattagagatttaggtgaagaggttgaagtagagccaaaaatagttatt
gaagttgcttatgaagagattcaaaaatctgataaatatccttgtggctatgctttgaga
ttcccaagagttgtgaggtttagatttgataaaggaaaagatgatataaacactatagaa
gatgttgaaagaatatatgaaatccaaagggggaggaaataa

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