Methanopyrus kandleri: MK0999
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Entry
MK0999 CDS
T00078
Symbol
cdc9
Name
(GenBank) ATP-dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mka
Methanopyrus kandleri
Pathway
mka03030
DNA replication
mka03410
Base excision repair
mka03420
Nucleotide excision repair
mka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MK0999 (cdc9)
03410 Base excision repair
MK0999 (cdc9)
03420 Nucleotide excision repair
MK0999 (cdc9)
03430 Mismatch repair
MK0999 (cdc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mka03032
]
MK0999 (cdc9)
03400 DNA repair and recombination proteins [BR:
mka03400
]
MK0999 (cdc9)
Enzymes [BR:
mka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MK0999 (cdc9)
6.5.1.6 DNA ligase (ATP or NAD+)
MK0999 (cdc9)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MK0999 (cdc9)
DNA replication proteins [BR:
mka03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MK0999 (cdc9)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MK0999 (cdc9)
DNA repair and recombination proteins [BR:
mka03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MK0999 (cdc9)
NER (nucleotide excision repair)
Other NER factors
MK0999 (cdc9)
MMR (mismatch excision repair)
Other MMR factors
MK0999 (cdc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
GntR
Motif
Other DBs
NCBI-ProteinID:
AAM02212
UniProt:
Q8TWN3
LinkDB
All DBs
Position
complement(958234..959913)
Genome browser
AA seq
559 aa
AA seq
DB search
MYYSSLAEAFERLERISSRKAKISLIAQFLRQCPEDVVDTVALFLANQVFPGWDPRDLGI
GSKLMRKVIATATGSTDSEVTELFKRLGDLGLTAEELLKRRKTSTLLDSRPLMVGEVRET
FEKIAEVEGEGAVKRKMRLMMGLLARAKPKEARYLVRQALSELRTGVRESTVEEAIAQAF
GVSRKLVERAHMLSNDLGLVAKVAMTKGEEGLREIDLRPMRPIKPMLAQAARNVKEALAE
VGGKGAVEIKLDGARVQVHSDGEEVRVYTRRIEDVTHALPDIVEAVKDCVDADEFILEGE
AVAINPETGKPRPFQELLHRIKRKYDIEEVRKEIPVELHLFDCLYVDGESLVDTPFRERR
RRLEEIVREREGEVMLVEQVITDDPKEAAEMFHRALEMGHEGVMVKDLDANYTPGVRGKK
MLKVKPVLETLDCVVIGGIWGKGKRKGLIGSYLLAVWDENKENLLEVGKVGTGMDDETLE
RLTKMFEDLIVEESGREVRFKPEVVFEVEFEDIQKSPKYSSGFALRFPRLVRVRDDLGPE
DADTIEKVRRIYEEVLQKH
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
gtgtactactcgtccctggcggaggccttcgagaggctggagcggatcagttccaggaag
gccaagataagcctgatcgcccagttcctacggcagtgtccggaggacgtcgtcgacacc
gtcgcactgttcctggccaatcaggtgttccccggatgggatccgagggacctcggcatc
gggtccaagctgatgcggaaggtgatcgcgactgccacggggtctaccgactccgaggtc
acggagctgttcaagcggctcggcgatctcggactcaccgccgaggagctgctgaagcgt
cggaagacgtcgacgctgctcgattcgcgacccctcatggtgggcgaagtcagggaaacc
ttcgagaagatagcggaagtcgagggtgagggagccgtcaagcggaagatgaggctgatg
atggggttgctcgccagggcgaagccgaaggaggcccgctacctggttcggcaggcgctg
agtgagctgcggacgggcgtacgggagagcaccgtggaggaggccatcgcccaggccttc
ggtgtgagcaggaagttggtcgagagggcccacatgctgtcgaacgacctaggactggtg
gccaaagtggcgatgacgaagggcgaggaaggtctccgcgagatcgacctgagacccatg
cgaccgatcaagccgatgctggcgcaagcagcgaggaacgtgaaggaggcgctcgccgag
gtcggagggaagggcgcggtggagatcaagctggacggcgcccgcgtgcaggtacactcg
gacggagaggaagtgcgcgtgtacaccaggaggatcgaggacgtgacccacgcgctcccc
gatatcgtggaggccgtgaaggactgcgtggacgcggacgagttcatcctggagggcgag
gccgtggccatcaaccccgagacgggcaaaccgagaccgttccaggagctgctccatagg
atcaagcggaagtacgatatcgaggaggtgcgcaaggagatcccggtggagctgcacctc
ttcgactgcttgtacgtggacggcgagtcgttggtcgacaccccgttccgagagcgtcga
cgtcgactcgaggagatagtgcgcgagcgcgagggagaggtgatgctcgtcgagcaggtg
atcacggacgatcccaaggaggctgccgagatgttccatcgagccctagagatgggccac
gaaggggtcatggtgaaggacctggacgcgaactacactccgggcgtccgcggcaagaag
atgctgaaggtcaagccggtactcgagacgctggattgtgtggtcatcggcggtatttgg
ggtaagggcaagcggaagggactcatcggttcctacctgctggccgtctgggacgagaac
aaggagaacctgcttgaggtgggtaaggtcggaacgggcatggacgacgagacactcgag
cgattgaccaagatgttcgaggacttgatagtggaggagtcgggacgtgaggttaggttc
aagcctgaggtggttttcgaggtggagttcgaggatatccagaagagcccgaagtactcg
tccggattcgcccttcggttcccgagactggtgcgcgtgcgcgacgatctgggtccggaa
gacgcggacacgatcgagaaggttcggaggatctacgaggaagtactgcagaagcactag
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