Marinimicrobium sp. C6131: OOT55_01840
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Entry
OOT55_01840 CDS
T08615
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
mke
Marinimicrobium sp. C6131
Pathway
mke02020
Two-component system
mke02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mke00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
OOT55_01840
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OOT55_01840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mke03021
]
OOT55_01840
Transcription machinery [BR:
mke03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OOT55_01840
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Phage_Mu_Gp48
IL7
Motif
Other DBs
NCBI-ProteinID:
UZJ44817
LinkDB
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Position
complement(428936..430450)
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AA seq
504 aa
AA seq
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MKQSLQLKLGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEVEEVHEGPEEKS
NDDRESDARNGKDTRDGETPASTDSDSADLGQTDSDWNDEIPNDLPVDTSWDDVYQSTPA
ASGSYEGDENSDYDSRRGTTDSLYDHLMWQLNLTPMSDRDRIIAMTLIDAVEPSGMLSIS
LEEIFEGLQNDWEELEYDEIVAVQHRLQQFDPCGVASQNLSECLLVQLQQMPADTPLLEA
AKTIVRQYLPQLASRDYRQLMRRTRLKEHELRDAITLIQSLNPRPGDQIASGDVEYVVPD
VFVEKREGRWVVELNPDIAPRLRINPDYASMVKRADSSTDNTFLKDNLQEARWFLKSLQS
RNETLLKVATCIVEKQRGFLDHGAEAMRPLVLHDIAELVDMHESTISRVTTQKYMHTPQG
IFELKYFFSSHVSTESGGECSSTAIRAIIKKLVASESPQKPLSDSKITALLAEQGIKVAR
RTIAKYRESLGIPPSNERKTLGPA
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatccctacagctcaaactcggccaacagctgaccatgacgcctcagttgcag
caggcaattcgcctgttacaactgtccactctggacctgcagcaggaaatccaggaagca
ctggactccaaccccatgctggaagtggaggaagtgcatgaaggccccgaggaaaaaagc
aacgatgatcgggagtcggatgcccgcaacggcaaagacacccgggacggagagaccccg
gccagcacggatagcgacagcgccgatcttggccagaccgacagcgactggaacgacgaa
atccccaacgacctgcccgttgacaccagttgggacgacgtctaccagtccaccccggcc
gcctcaggctcttacgagggcgatgaaaacagcgattatgacagccgacggggcaccacg
gactcgctctatgatcacttgatgtggcagttgaatctgacccccatgtccgaccgggac
cggatcattgccatgaccctgatcgacgccgtcgaacccagcggcatgctctccatctct
ctggaagagatattcgaaggtctgcagaacgactgggaagaacttgaatacgacgaaatt
gtggcggtccagcaccgcctccaacagtttgatccctgcggcgtcgccagtcagaacctg
tccgagtgcctgctggtccagttgcagcagatgccggctgacaccccgctactcgaggcg
gccaagaccatcgtccgtcagtacctgccccagttggccagtcgcgattatcgccagttg
atgcgtcgcacccgattgaaggagcacgaactgcgcgatgccattaccctgatccagagc
ctgaacccccgccccggggatcagattgccagcggcgacgtggagtacgtggtaccggac
gtttttgtcgagaagcgcgagggccgctgggtggtggaactcaacccggatatcgcgccg
cgcctgagaatcaatcccgactacgcttccatggtaaaacgggccgactccagcaccgac
aacactttcctcaaggacaacctgcaggaagcccgctggttcctgaaaagtctgcaaagc
cgcaacgaaaccctgctcaaggtggccacctgtattgttgagaagcagcgcggctttctg
gatcatggcgccgaagccatgcgcccgctggtactgcacgacatcgccgagctggtggat
atgcatgaatcgaccatctcccgggtgaccacgcagaaatacatgcatacccctcagggt
atttttgagctcaagtactttttttcgagtcatgtcagcacggaatccggcggcgagtgc
tcttccaccgcaatccgggctatcattaagaaactggtggcctccgagtcacctcaaaag
ccactgagtgacagtaagattaccgcgctgttggccgaacagggcatcaaggtagcccgg
cgtaccatcgccaaataccgggagtcgctgggcatccccccatcgaacgagcgaaagacc
ctgggacctgcctga
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