Mycobacterium sp. KMS: Mkms_5930
Help
Entry
Mkms_5930 CDS
T00442
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mkm
Mycobacterium sp. KMS
Pathway
mkm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Mkms_5930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mkm03400
]
Mkms_5930
Enzymes [BR:
mkm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Mkms_5930
DNA repair and recombination proteins [BR:
mkm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Mkms_5930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABL95104
UniProt:
A1UQJ6
LinkDB
All DBs
Position
pMKMS02:complement(125440..126429)
Genome browser
AA seq
329 aa
AA seq
DB search
MPSRSKLSVRDPAFAPMLATLGAAPSGAAHATEWKFDGQRATVVVEHGAVVVFTRNGMEV
TRTFPELQSIAAAVGDRRMVLDGEIVALDTEGRPSFTRLQRRWPQQRRPSAELLREVPCR
VMAFDVLRLDGRDTTALPYIERRELLDDVMVAKSRVLTVPAALHDVDPADALEAAALHGM
EGIVVKRLDSPYRPGQRSPDWTKVPVRATCELLIAGYWCAGGPGGRSCVGSLLVAGYNPD
GDLVAIGQVGTGFSATTRRRLFDQLQPIRRTTSPVANRVELSGVRFVEPCYVAEIAYREY
VPGRWLRHASFKGCREVADLSQIQIPNCA
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
gtgcccagcaggtccaagctctctgtgcgcgaccccgcgttcgcgccgatgctggccacc
ctgggcgccgcaccctccggcgccgcccatgccaccgagtggaaatttgacgggcagcgc
gcgaccgtcgtcgtcgagcacggcgcggtggtggtgttcacccgcaacgggatggaagtg
actcgaaccttccctgaacttcagtcgatcgccgcggcggtcggcgatcgccgcatggtg
ctcgacggcgaaatcgtggccctcgacaccgaaggccggccgtcgttcacccggctgcag
cgccgttggccccagcagcgccgacccagcgccgagctgctccgcgaggtgccctgccgc
gtgatggccttcgacgtcctgcggctcgacggccgcgacaccaccgcactgccctacatc
gagcgccgcgagctgctcgacgacgtgatggtggccaagtcgcgtgtcctgaccgtgccg
gccgccctgcacgacgtggaccccgcagacgcactcgaggcggccgcgctgcacggcatg
gaaggcatcgtggtcaagaggctcgactcgccgtaccggcccgggcagcgcagccccgac
tggacgaaagtcccggtccgcgccacctgcgagctgctgatcgccggctattggtgtgcc
ggcggcccgggcggacgcagctgtgtgggctcgctgctggtggccggctacaaccccgac
ggcgacctggtagccattggccaggtcggcaccgggttcagcgccaccacccgccggcgg
ctgttcgaccagctgcagccgatccggcgcaccacctcacccgtcgccaaccgggtcgag
ctgtccggcgtgcggttcgtggaaccgtgctacgtcgccgagatcgcctaccgcgaatac
gttccgggccgctggctgcggcacgcctcattcaagggttgccgcgaggtggcggacctc
tcgcagattcagatcccgaactgcgcatag
DBGET
integrated database retrieval system
