Mycobacterium kansasii ATCC 12478: MKAN_09095
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Entry
MKAN_09095 CDS
T02887
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mkn
Mycobacterium kansasii ATCC 12478
Pathway
mkn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mkn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MKAN_09095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mkn03400
]
MKAN_09095
Enzymes [BR:
mkn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MKAN_09095
DNA repair and recombination proteins [BR:
mkn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MKAN_09095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGZ50419
UniProt:
U5WMM9
LinkDB
All DBs
Position
complement(2054452..2056803)
Genome browser
AA seq
783 aa
AA seq
DB search
MGSAQVWPPGGEDGPRVTLTNADKVLYPATGTTKRDVFDYYTRIAEVMVPHIAGRPATRK
RWPNGVDQPSFFEKQLASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQQAALEVHV
PQWRFVAEWTRSEAEQLKPGPATRLVFDLDPGDGVTMAQLVEVAHAVRELISGIGLSTFP
LTSGSKGLHLYAPLDEPVSSRGATVLAKRVAQQLEKTMPTLVTAIMTKSLRAGKVFLDWS
QNNGSKTTIAPYSLRGRDQPTVAAPRTWDELHDPGLRQLRYDEVLVRVARDGDLLAPLDA
DLPAGDRLTKYRSMRDASKTPEPVPRSRPVVGQGNTFVIQEHHARRLHYDFRLERDGVLV
SWAVPKNLPETASVNHLAVRTEDHPLEYATFEGTIPKGEYGAGKVIIWDAGTYDVEKFRD
GAESAAEKGPQKGPQKGPRKGEVIVNLHGKRISGRYALIQTNGDQWLAHRMKEQQAFDFD
TLAPMLTTHGSVDRLKAGQWAFEGKWDGYRLLVEADHGAVRLRSRSGRDVTKEYPQLRSL
AADLADHHVVLDGEVVALDAAGVPSFNEMQNRVRATRIEFWAFDLLYLDGRSLLRAKYQD
RRKLLETLGAAGHLTVPELLPGDGAEAMAYSRKRGWEGVIAKRRDSGYQPGRRSAAWIKD
KHWNTQEVVIGGWRAGEGGRSSGIGSLLMGIPGPSGLHFAGRVGTGFTQRNLDSLKRTLA
PLRTDENPFGASLPAREAKGVTFVEPTLVGEVRYSEWTPDNRLRQTSWRGLRPDKDPSEV
VRE
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggttcggcgcaggtgtggcctccgggcggggaggatggtccgcgggtcacgctgacc
aacgccgacaaggtgctctatccggcgaccgggaccaccaagcgcgacgtcttcgactac
tacacccgcatcgccgaggtgatggtgccgcatatcgccgggcgtccggcgacccgcaag
cgctggcccaacggagtcgaccaaccttccttcttcgaaaaacaactggcgtcgtcagcg
ccggactggttgccgcgggcaagcgtcgtgcaccggtccggaaccacgacctatccgatc
atcgacagcgcgacggggctggcgtggatagcccagcaggcggcgctcgaggtgcatgtg
ccgcagtggcggtttgtcgccgaatggacacgaagcgaggcggagcagttgaagcccggc
ccggctacccgattggtgttcgacctggacccgggtgacggcgtgacgatggcccagctg
gtcgaggtcgcacatgcggtccgggagctgatcagcggtatcgggctgagcaccttcccg
ctgaccagcggcagcaagggtctgcatctgtacgcaccactggacgagccggtgagcagc
agaggcgccacggtgctggccaaacgcgttgcgcaacaactggagaagacgatgcccacg
ctggtcaccgcgatcatgaccaagagcctgcgggcgggcaaggtgtttttggactggagc
cagaacaacgggtccaagaccaccatcgcgccgtactcgctacgcgggcgcgaccagccg
acggtcgccgcgccccgcacctgggacgaactgcacgacccggggctgcgccagctgcgc
tatgacgaggtgctggtccgggtcgcccgcgacggggacctgctcgcgccgctggatgcc
gacctgcccgccggggaccggctgaccaagtaccgcagcatgcgcgacgcgtcgaagacc
cccgaaccggttcctcggtccagacctgttgtcggccaaggcaatacctttgtcatccag
gagcaccacgcccgccggctgcactacgacttccggttggagcgtgacggcgtgctggtg
tcgtgggcggtgccgaagaacctgccggaaaccgcatcggtgaaccatcttgcggtgcgc
accgaagatcatccgctggaatatgcgacattcgagggcacgatcccgaagggggagtac
ggcgccgggaaggtgatcatctgggacgccggcacgtacgacgtcgagaagttccgcgac
ggggccgaaagcgcggccgaaaaaggaccccaaaaaggaccccaaaaaggaccccgaaaa
ggagaagtgatcgtcaacctgcatggcaagcgaatctccgggcggtacgcgctgatccaa
accaacggtgaccagtggctggcgcatcgcatgaaggaacagcaggccttcgacttcgac
accctggctccgatgctcaccacacacggttcggtggaccgtctcaaggcgggacagtgg
gccttcgaaggcaagtgggacggctaccggttgctggtggaggccgaccacggcgccgtg
cggctgcgctcccgtagtggccgtgacgtcaccaaagaatatccgcaattgcgttcgctg
gcagcagacctcgccgatcaccacgtggtgctcgacggggaggtggtcgcactcgacgcc
gccggcgtgcccagcttcaacgaaatgcagaaccgggtccgggccacccgcatcgagttc
tgggcattcgacctgctctacctcgacggccgctcgctgttgcgtgccaagtaccaggac
cggcgcaagctgctggaaaccctgggcgccgcaggccatctcactgttccggagctgctg
cccggtgacggagccgaggccatggcttactcgcgcaaacgcggctgggagggtgtgatc
gccaagcggcgtgattccggttatcagcccggccggcgttcggcagcgtggatcaaggac
aagcactggaacacccaggaggtcgtcatcggcggctggcgggccggggagggcggtcgc
agcagcggcatcggctcgctgctgatgggcattcccggcccttccgggctgcatttcgcc
ggccgagtcggaacgggcttcacccaacgcaacctggacagcctgaaaaggacgctggcg
cccttgcgcaccgacgaaaatcctttcggcgcttcgcttccggcgcgtgaggctaagggc
gtcacgttcgtcgagccgacgctggtcggcgaggtgcgctatagcgaatggacccccgac
aatcggctgcgtcaaacgagttggcgtgggctgcggccggacaaggacccgagtgaggtg
gtgcgggaatga
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integrated database retrieval system
