Microvirga lotononidis: U0023_15660
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Entry
U0023_15660 CDS
T09656
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mld
Microvirga lotononidis
Pathway
mld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0023_15660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mld03019
]
U0023_15660
Enzymes [BR:
mld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0023_15660
Messenger RNA biogenesis [BR:
mld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0023_15660
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WQO26129
LinkDB
All DBs
Position
3305616..3307133
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AA seq
505 aa
AA seq
DB search
MTLFTDFGLAQPILKALSAEGYEKPTPIQAQTIPYAMEGRDVCGIAQTGTGKTAAFALPI
LHRLNANPKPRKPKSPRVLVLSPTRELSGQIADSFKAYGRNLRLSTEVVFGGVTISRQEK
ALAQGVDVLVATPGRLIDLVDRRALSLRDIEILVLDEADQMLDLGFIHALKRIVTLLPKD
RQSLFFSATMPKTISTLADSFLRDPAHVAVTPVATTAERVEQSVIFVQTNRKQVLLETLL
RDPSIDRVLVFTRTKHGADKVVRGLDKAGIAGAAIHGNKSQPQRERALAGFRDGSCRVLV
ATDIAARGIDVEGVTHVINYDLPNVPESYVHRIGRTARAGATGLAISFCNDEEKAYLKDI
EKLTRLKVPVMPLPEGLPAAPAASETSERREPQRGRPAPHARGHQGHGQPRSADPNAERG
PKRRRGRGGKPGGNAQPQGGQPASGNQQRPAPAPRPAQGQRPAQQAQRAPQGQRPAAQGK
PASARQDGRRDGAQVAWLEKSPRRR
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgacactcttcaccgatttcggattggcccagccgatcctgaaggccctgtctgccgaa
ggctatgagaagcccacgccgatccaggcccagaccattccctatgccatggaaggccgc
gacgtctgcggcatcgcccagaccggcaccggcaagacggccgccttcgcgctgccgatc
ctgcatcgcctgaacgcgaacccgaagccgcgcaagccgaagagcccgcgcgtcctcgtt
ctcagcccgacccgcgagctgtccggccagatcgccgacagcttcaaggcctatggccgc
aacctgcgcctttccaccgaggtggtgttcggcggcgtcaccatctcccgccaggagaag
gcgctggctcagggcgtcgacgtgctcgtcgcgacgcccggccgcctgatcgacctcgtg
gaccgccgggccctgtccctgcgtgacatcgagatcctcgtcctcgacgaggccgaccag
atgctcgacctcggcttcatccatgcgctgaagcgcatcgtgaccctgctgccgaaggac
cgccagagcctgttcttctcggccaccatgccgaagacgatctcgacgctggccgattcg
ttcctgcgcgatcccgcccatgtggccgtcaccccggtggcgacgaccgccgagcgcgtc
gagcagagcgtgatcttcgtacagaccaaccgcaagcaggtcctgcttgagacgctcctg
cgcgatccgtccatcgaccgcgtcctcgtcttcacccgtaccaagcacggcgcggacaag
gtggtgcgcggcctcgacaaggccggcatcgcgggtgcggccattcacggcaacaagtcc
cagccgcagcgcgaacgcgcgctggcgggcttccgtgacggctcctgccgcgtgctcgtg
gcgacggatatcgccgcgcgcggcatcgacgtcgagggcgtgacgcacgtcatcaattac
gacctgccgaacgtgccggaatcctacgtccaccgcatcggccgcacggctcgcgccggg
gcgaccggccttgcgatctcgttctgcaacgacgaggaaaaggcgtacctgaaggatatc
gagaagctgacccgcctcaaggttccggtcatgcctctccccgagggccttcccgccgct
cctgcagcttccgagacttcggagcgccgcgagccgcagcgcggtcgtccggctccccat
gcccgcgggcatcaggggcacggccagccgcgcagcgccgatccgaacgccgagcgcgga
cccaagcgccgtcgcggtcgcggcggcaagccgggcggcaacgcccagccgcagggcggc
cagccggcctccgggaaccagcagcggcccgcaccggccccgcgcccggcccaggggcag
cgtcccgcgcagcaggcacagcgtgccccgcagggccagcgccccgccgctcaaggcaag
cccgcatccgcccgtcaggacggacgccgggacggggcccaggtggcctggctcgaaaag
agcccgcgccgccggtaa
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