Methylovirgula ligni: CWB41_02085
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Entry
CWB41_02085 CDS
T05824
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mlg
Methylovirgula ligni
Pathway
mlg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CWB41_02085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlg03400
]
CWB41_02085
Enzymes [BR:
mlg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CWB41_02085
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CWB41_02085
DNA repair and recombination proteins [BR:
mlg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CWB41_02085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
IBR
Motif
Other DBs
NCBI-ProteinID:
QAY94681
LinkDB
All DBs
Position
454657..455538
Genome browser
AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLAPALVGAQFSAVEQRRADLRFPFPKDFPARLTGRTVTALRRRAKYL
LVDLDNGETLVMHLGMSGSFRIEDDAGENTPGLFHNSRGKDAAHDHVVFHLSNGKRITYN
DPRRFGFMLLVKSDLLAAHPLFRDVGLEPLSEALNGTALTQLFSGKKAPLKAALLDQRLI
AGLGNIYVSEALHRAGLSPRRTAGSIARKNGAASPRAELLAKAIREVLEEAVKAGGSSLR
DHRQTNGDLGYFQHNFRVYDRAGAPCPRPGCGGTIKRIVQSGRATYYCPTCQK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccccgaagtcgaaaccgtgcgccgcggcctcgccccggcgctcgtcggc
gcgcagttttctgccgtcgagcaaagacgcgcggatttgcgctttccctttccgaaggat
tttccagcgcggctcaccggccgcaccgtcacggcgctgcggcggcgagcaaaatatctg
ctcgtcgatctcgataacggcgagacgcttgtcatgcatctcggcatgtcgggctctttc
cgcatcgaggacgacgcgggcgagaacacacccggcttgttccacaattcgcgcggcaag
gatgccgcgcacgatcacgtcgtctttcacctctcgaacggcaagcgcatcacctataac
gatccgcgccgcttcggcttcatgctgttggtcaagagcgatctcctcgccgcccatccg
ctgtttcgcgatgtcggcctcgagccgttgagcgaggcgctgaacggcacagccctgaca
cagctcttttccggcaagaaagcgccgttgaaggccgcgctgctcgaccagcgcctcatc
gccggcctcggcaacatctatgtcagcgaggcgctgcatcgcgccggactttccccgcgc
cgcaccgcaggctcgatcgcccgcaagaacggcgcggcgtcaccgcgcgcggagcttttg
gcgaaagccattcgcgaggttctggaagaagcggtcaaggccggtggctcgtcattgcgc
gaccatcgccagaccaacggcgatctcggctatttccagcataatttccgtgtctacgac
cgcgccggcgcgccctgcccgcgccccggctgcggcggtacgatcaagcgcatcgtccag
tccggccgcgcgacctattattgccccacctgtcagaagtag
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