Mycobacterium liflandii: MULP_04790
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Entry
MULP_04790 CDS
T02444
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mli
Mycobacterium liflandii
Pathway
mli03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MULP_04790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mli03400
]
MULP_04790
Enzymes [BR:
mli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MULP_04790
DNA repair and recombination proteins [BR:
mli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MULP_04790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGC64295
UniProt:
L7VCM2
LinkDB
All DBs
Position
complement(5217591..5220107)
Genome browser
AA seq
838 aa
AA seq
DB search
MYSAIRRPRASRPMWVSRSTSRPNLASPTATLRGLPPTYSAGSGPSTMSIRASPITSPRA
MATGYVGHMGSAQAWPPGQANGPQVTLTNADKVLYPATGTTKSDVFGYYTGIAEVMIPHI
AGRPATRKRWPNGVDQASFFEKQLASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQ
QAALEVHVPQWRFVAEWTSKGEILTPGPATRLVFDLDPGEGVTMAQLAQVAWAVRDLLAD
IGLSTLPLTSGSKGLHLYTPLDEPVSSKGATVLAKRVAQQLETVMPALVTATMTKSLRAG
KVFLDWSQNSGSKTTIAPYSLRGREQPTVAAPRSWEELDDPGLRQLTYDEVLARLTRDGD
LIAALDADLPGDDRLLKYRSMRNASKTPEPVPRARPVVGQGNTFVIQEHHARRLHYDFRL
ERDGVLVSWAVPKNLPETTSVNHLAVHTEDHPLEYATFEGNIPKGEYGAGKVIIWDSGTY
DTEKFRDDSRNGAEKGEVIVNLHGSRISVRYALIQTNGDQWLAHRMKDQTAFDFDTLAPM
LTSHGSVAGLESGQWAFEGKWDGYRLLVEADHGALRLRSRSGRDVTAEYPQLRSLAADLA
DHHVVLDGELVALDSSGVPSFNEMQNRVRATRIEFWAFDLLFLDGRSLLRARYRDRRKLL
ETLGSAGNLIVPELLPGDGAEALAYSHKRGWEGVIAKRRDSGYQPGRRSSAWIKDKHWNT
QEVVIGGWRVGEGGRSSGIGSLLMGIPGPSGLHFAGRVGTGFTERDLANLKKTLVPLHTD
ESPFDAALPAREAKGVTFVAPTLVGEVRYSEWTPDDRLRQSSWRGLRPDKNPSEVVRE
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgtactcggcgatccgtcgtccgcgggcgtcgcggccgatgtgggtcagcagatcgacg
tcgcggcccaatctggccagtccgaccgcgacgttgagggggctgcccccgacgtactcg
gccgggtccggcccatcgacgatgtcgatcagggcttcaccgatcaccagcccacgtgcc
atggcgacaggttacgttggccatatgggttcggcgcaggcctggcctcctggacaggcg
aatggtccgcaggtgacgctgaccaacgcggacaaggtgctgtacccggctaccggaacc
accaagtctgacgtcttcggttactacaccggcatcgccgaggtgatgatcccgcatatc
gccgggcgcccggcgactcgcaagcgctggcccaacggcgtcgatcaggcgtcctttttc
gaaaagcagctggcgtcgtcggcgccggactggctgccgcgtgccagcgtggtgcaccgg
tcgggaacgacgacctatccgatcatcgacagcgccaccgggctggcctggatcgcacaa
caggccgccctcgaggtgcacgtcccgcagtggcggttcgttgccgagtggacgtccaaa
ggcgaaatcctcacgcccgggccggccacccgattggtgttcgacctggacccgggcgag
ggcgtgacgatggcccaactcgcgcaggtggcgtgggcggtgcgcgatctgctcgccgac
atcggcctgagtaccctcccgctcaccagcggtagcaagggcctgcacctctacaccccg
ctcgacgagccggtgagcagcaagggcgccacggtgttggccaaacgggtcgcgcagcaa
ctggaaacggtgatgccggcgttggtcaccgcgaccatgaccaagagtctgcgggccggg
aaagtgttcctggactggagccaaaacagcggttcgaagaccaccatcgcgccgtattcg
ctgcgtgggcgcgaacaaccgacagtcgccgcaccacgcagttgggaggagctcgacgac
ccggggctgcgccagctgacctacgacgaggtgcttgcccgcctcacccgcgatggcgat
ctgattgcggcgctggacgcggacctccccggcgacgaccggctgctcaaatatcgcagc
atgcgcaacgcgtcgaaaacgccggagccggtgccccgagccagacccgttgtcgggcag
ggtaataccttcgtgatccaagagcatcacgcgcgccgtctgcattacgacttcaggctg
gagcgtgatggggtactggtgtcatgggcggtgccgaaaaacctgccggaaaccacgtcg
gtgaaccacctggccgtgcacaccgaagatcatccgctggaatacgcgacgttcgagggc
aacatcccgaaaggggagtacggcgccggcaaggtgatcatctgggattccggcacctat
gacaccgagaagttccgcgacgactcgagaaacggtgcggaaaagggggaggtgattgtc
aacctgcacggcagtcgaatctcggtgcggtacgcgctgattcagaccaacggggaccaa
tggctggcgcatcgcatgaaggaccagacggccttcgatttcgacaccctcgcgcccatg
ctcacctcccacggttcggtggcaggtctcgagtcgggtcagtgggcgttcgaaggcaag
tgggacggctaccggctgctggtcgaagccgaccatggcgcgctgcgactgcgctcccgc
agcggacgtgacgtcaccgcggaatacccccaattacgttcattggccgccgatctcgct
gatcaccacgtggtgctcgacggtgaattggtggccctcgactcctccggagtgcccagc
ttcaacgagatgcagaaccgggtgcgcgccacccgcatcgagttctgggcgttcgacttg
ctctttctggacggtcgctcgctactgcgggccagataccgcgaccggcgcaagctactg
gaaaccctgggcagtgcgggcaatctgatcgttccggagttgttgcccggtgacggcgcc
gaggcgctggcctactcgcacaagcgcggttgggagggagtcattgccaagcgccgcgac
tccggctatcaacccgggcggcgctcgtcggcgtggatcaaggacaaacactggaacacc
caggaagtcgtcatcggcggttggcgagttggggagggtgggcgcagcagcgggattgga
tcgttgctcatgggcattcccggcccgagcggtttgcacttcgccggccgtgttggaacc
ggcttcaccgaacgtgacctggccaacctcaagaagacgctggtgccgctgcataccgac
gaatccccattcgacgctgcgcttccggcgcgcgaggccaagggtgttacgttcgtcgcg
ccgacgctggtcggggaggtacgctatagcgagtggacccccgatgaccgattgcggcaa
tccagctggcgtgggttgcgcccggacaaaaacccgagtgaggtggtgcgcgaatga
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