Mesorhizobium loti NZP2037: A9174_03965
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Entry
A9174_03965 CDS
T04711
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mln
Mesorhizobium loti NZP2037
Pathway
mln03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A9174_03965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mln03400
]
A9174_03965
Enzymes [BR:
mln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A9174_03965
DNA repair and recombination proteins [BR:
mln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A9174_03965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ANN56006
LinkDB
All DBs
Position
845247..847736
Genome browser
AA seq
829 aa
AA seq
DB search
MAGLEQYHAKRDFKKTSEPAGKVARTGKNEAGGIFVIHKHAATRLHYDLRLEHGGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWVPETDPAKA
MKKGHISFELNGHKLHGLWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKERPESVK
SGLTIEEVGEGKAAKGKKPEVWHSNKPAAGTAKAASRKLDFIEPQLATLERNAPPGKDWL
HEVKFDGYRMQAQIAGTEVRLLTRTGLDWTDKFGSEIIAELAALKCSDAILDGEIVVLAD
NGVSSFALLQQDLSAKRKNRFLYYVFDLMRLDGKDLRAEPLVERKQALQELVGKQSENAA
VRFSDHFFEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYL
PSDKTGRGLRSLLVGYYEGGKLQYAGRVGTGFSAKGAIALKNKLDALKAKASPFDKAVPK
GKGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEDVVQEKPKAATGKGKPASS
GGGTMTTSVKLSHPDKLLWPDEKISKQGLLDHYAEVWPRMEQFVVNRPLSLVRAPDGIGG
PRFFQKHASAGMSDRIARMKDPTDGEEILFVRDFDGVAALVQYGVVEIHIWGCTIDKLEQ
PDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVPLKPSADWE
AVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKKGAT
VSMPVTWAEIEAGLAPNAFPIGDKTTLKQLAEADPWVDFFKQGKVLKRG
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctcgaacagtatcatgccaagcgcgatttcaagaagacatcggagccggcg
ggcaaggtcgcacgcaccgggaaaaacgaagccgggggcatcttcgtcatccacaagcac
gcggcgaccaggctgcactacgaccttcggctcgagcatggcggcgtgctgtggagctgg
gcggtgacgcgggggcccagcctcgatccgcacgagaagcggctggccgtccatgtcgag
gaccacccgatcgactatgcgccgttcgaaggcacgatcccgaagggcgagtatggcggc
ggctcggtcatcgtctgggacgaggggacatgggtgcctgagaccgacccggccaaggcg
atgaagaagggccacatcagtttcgagctcaacggccacaaattgcatgggctgtggcat
ctggtgcggctgaagccgcgggcgggcgaaaagcgcgacaactggctcttgatcaagtcc
gacgatgccgcggcgcgcccgggcgaggacattttgaaggagaggccggaatcggtgaag
tcgggcctgacgatcgaagaggtcggcgagggcaaggcggccaagggtaagaagccagaa
gtctggcactccaacaagccggccgccggcacggcgaaggccgcaagccgcaaactcgat
ttcatcgagccgcaactggcgacgctggagcggaacgcaccgccgggcaaggactggctg
catgaagtcaaattcgacggctatcgcatgcaggcgcagatcgccggcacggaagtgcgg
ctcttgacccgcaccggcctcgactggaccgacaagtttgggagcgagatcatcgcggaa
ctggccgcgctgaaatgcagcgacgccatcctcgacggcgagatcgtcgtgctggccgac
aacggcgtctcgtccttcgcgctgctgcagcaggatctgtcggcgaagcggaagaaccgc
ttcctctattacgtgttcgacctgatgcgtctcgacggcaaggatttgcgcgccgagccg
ctggtcgagcgcaagcaggccttgcaggaactggtcggcaagcagtcggaaaatgcggcg
gtgcgtttctccgaccatttttttgaacctggcaagatcatgctggagcatgcctgccgc
atggggctggaaggcgtcgtctcaaaacgcgccgatgcgccctatcgcagcgggcgcggc
ccgacctgggtgaagtcgaaatgcacggcacggcaggaattcgtcatcggcggctatctg
ccgtcggacaagaccgggcgcgggctgcgctcgctgctggtcggctattacgagggcggc
aaactgcagtatgccggtcgtgtgggcaccggcttctcggccaagggcgctatcgcgctg
aagaacaagctcgatgcgctgaaggcgaaggcttcgcccttcgacaaggccgtgccgaaa
ggcaaggggctggtctgggtcaagccggaattggtcggcgaagtggagtttcgcagctgg
acgtcggaccgtataatacgtcatgcctcgttccaggggctgcgcgaggacaagccggcg
gaggacgttgtgcaggaaaagcccaaggcagcgacaggcaagggcaagccggcctcgagc
ggcggcgggacgatgacgaccagcgtaaaactctcgcatcccgacaagctgctatggccc
gacgagaagatctccaagcagggcctgctcgaccattacgccgaggtttggccgcgcatg
gagcagttcgtcgtcaaccggccgctcagcctggtgcgggcgccggacggcatcggcggc
ccgcgcttcttccagaaacatgcctcggccggcatgagcgacagaatagcccggatgaaa
gacccgacggatggcgaggaaatcctgttcgtgcgagatttcgacggggtggcggcgctc
gtccaatacggcgtggtcgagatccacatctggggctgcacgatcgacaagcttgaacag
ccggaccagatcatcttcgatctcgaccccgatgaaggtgtcgacgtcaaagcggtgcgc
gaggcggcgctcgatatccggggcaagctcgacgagttgtcgctgccgaacttcgtcaag
acatcgggcggcaaaggctatcatgtgctggtgccgctgaagccatcggcggactgggag
gcggtgaagaccttcgcccatgatttcgccaaggcgctcgaacagggtgcccccgaccgc
tacacggccacactctcgaagaaggcgcgcaccgggaaaatcttcgtcgactatctgcgc
aatggcaggggctcgacgacggtcgcgccgtattcctcgcgcgccaagaagggcgccacc
gtatcgatgccggtgacctgggccgagatcgaggccggcctggcgccgaacgctttcccc
ataggcgacaagacgacgctgaagcagttggcggaagccgatccttgggtggatttcttc
aagcagggcaaggtgttgaagcgggggtag
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