Mesorhizobium japonicum MAFF 303099: mll9625
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Entry
mll9625 CDS
T00043
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlo
Mesorhizobium japonicum MAFF 303099
Pathway
mlo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mlo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
mll9625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlo03400
]
mll9625
Enzymes [BR:
mlo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
mll9625
DNA repair and recombination proteins [BR:
mlo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
mll9625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAB54816
RhizoBase:
mll9625
UniProt:
Q98P39
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All DBs
Position
pMLb:complement(90698..93349)
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AA seq
883 aa
AA seq
DB search
MASDKLTTYKAKRDFKKTQEPSGQGSVKPSNRRRFVIQKHDATRLHYDLRLELGGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKNSPE
QALAKGDFKFTLEGERLHGSFVLVRMANDRERGKRTNWLLIKHRDEYAVETNGAAILDKN
DTSVASGRKMEAIAAGKGRSPKPFMLQGGKAEADAVWDSRTGLAAQERKTNIRAKRKKHG
TVTAADLPDFIAPQLCQTLARPPSESGWLHEIKFDGYRIQMRVLGGEAILQTRKGLDWTA
RYRAIARAAGNLPDAIIDGEICALDENGAPDFAALQAALAEGKTDALVYFAFDLLFEGAE
DLRVLPLSKRKARLRQFLTDTGEDDRIRFVEHFETGGEAVLRSACRLSLEGIVSKRADAP
YVSGRTETWAKSKCRAGHEVVIGAYATTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAAKV
RDLLPKLKAAATRKSPFTGIGAPKNEPGVVWLKPELVAEIEFAGWTSDGLVRQAAFKGLR
EDKPAEEVEADKPASPEKTKVPQPREPTAAAKPSRSRGKVDVMGVLISNPDKPLWPDAND
GIPVTKEDLARYYEAVGPWLIEHIRGRPCSIIRAPDGFGGEQFFQRHAMPGTSNLLELVE
VFGDKKPYLQIDRVEGLAAVAQIGALELHPWNCEPQQPEVPGRLVFDLDPGPDVPFKTVV
EAAKEMRARLDDLGLVSFCKTTGGKGLHVVTPLAVTKRSKLTWPEAKGFAHDVCLQMARD
NPALYLTKMAKNQRIGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWAQVKTDLDP
KRFTLRTVPGLLAKSTAWKDYGDGHRLLEASIKRLARSMRRAA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgacaagctaacaacatacaaggccaagcgcgatttcaagaagacgcaggag
ccgagcggtcaagggtcggtcaagccatccaaccgccgtcgtttcgtcattcagaaacat
gacgcgacgcggctgcattacgatctgcgacttgagctcggcggcgttttcaaatcctgg
gccgtgacgcgcggtccctctctcgatcctcatgacaagaggctcgcggtcgaggtggaa
gatcatccgctcgactacggggatttcgaagggacgattccaaaaggccagtatggcggc
ggcacggtcatgctgtgggaccgcggctattgggagcccgagggaaagaacagccccgag
caggcgctggccaagggcgatttcaaattcacgctcgaaggggagcggctgcatggcagt
ttcgtgctggtgaggatggccaacgaccgcgaacgcggcaagcgcaccaactggctgctg
atcaaacatcgcgacgaatatgccgtcgagacaaacggggctgcaatcctcgacaagaat
gacacctctgtcgcatccggacgcaagatggaggcaattgctgccggcaagggccgcagc
ccgaaacccttcatgctgcaaggcggcaaggccgaggcagatgcggtgtgggacagtcgt
acaggcttggcggcgcaggaacggaaaacaaacattcgcgcaaaaaggaagaagcacggg
actgtcactgccgccgatcttcccgacttcattgccccacagctctgccagacgctggcg
cggccgccctctgagagcggatggctgcacgagatcaagttcgacggctatcgcatccag
atgcgcgtcctgggcggcgaagctatcttgcagacccgcaagggtctcgactggaccgcc
agatatcgcgccattgcccgagccgccggcaatctgcccgatgcgatcatcgacggcgag
atctgcgcgcttgacgaaaacggcgccccggatttcgccgccctccaggcagcgctggcc
gagggcaagaccgatgcgcttgtctacttcgccttcgacctgctgttcgaaggcgctgag
gatttgcgtgtcttgccattgagtaagcgcaaggcgcgattgcgtcagtttctgaccgac
acgggtgaggacgatcgcatccgcttcgttgagcatttcgaaactggcggcgaggcagtg
cttcgctcggcctgccggctgtccttggaaggcatcgtttcgaagcgcgccgatgcgccc
tacgtttccggccgtaccgagacgtgggcgaagtcaaaatgtcgcgcaggccacgaggtc
gtcatcggcgcctatgccacaacgaatggcaaattccggtcgcttctggtcggcgtctat
cgcggcgatcacttcgtctatgtcgggcgcgtgggcacaggctatggcgcagccaaggtc
agggacctgctgccgaagttgaaagctgccgcgacccggaaatcacctttcaccggcatc
ggcgcgccaaagaacgaacccggcgttgtctggctgaagccggaactggtggccgagatc
gaattcgccggctggacgtccgacgggctcgtgcgccaagccgccttcaaaggcttgcgt
gaggacaaaccggccgaggaggtcgaagccgataagcctgcctcgccggaaaagaccaag
gtgccccagccgcgggagccgaccgcagcagccaagccttcccgcagccgcggcaaggtc
gatgtcatgggtgtgctgatctcgaatccggacaagccgctgtggccggatgccaatgat
ggcatccccgtaaccaaggaagatctcgcccgctattacgaagctgtcggtccctggctg
atcgagcacatccgcgggcggccctgctcaatcatccgcgcgccggatggattcggcggc
gagcagttcttccagcgtcatgcgatgccgggaacgtcaaatcttcttgaactggtggag
gtgttcggcgacaagaagccctacctacagatcgaccgtgtggagggtctcgccgccgtc
gcccagatcggtgcgctggaattgcatccctggaattgcgagccacagcagcccgaggtg
ccgggccggctcgtcttcgatcttgatccaggtcccgacgtcccgttcaaaacggttgtc
gaggcggctaaggaaatgcgcgcgcgcctcgacgatcttgggctcgtcagcttctgcaag
acgactggcggcaaagggctgcacgtcgtcacgcccttagcggtcaccaagcgcagcaag
ctcacctggccagaggcaaaagggtttgctcatgatgtctgcctgcagatggcgcgggac
aatcccgccctctacctgaccaagatggcgaagaaccagcgcatcggccgcatcttcctc
gactatctgcgcaacgatcgcatggcgaccgccgtggctccgctgtcgccgcgggccagg
cccggcgcgacagtctccatgccgctcacctgggcacaggtcaaaaccgatctcgatccg
aagcgcttcaccctgcgcaccgtgcccgggctgctggcaaagagcacggcctggaaggac
tatggcgatggccatcgcctcctggaagcatccatcaagcgactggcaagatcgatgcgg
cgggcggcctga
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