Allomuricauda lutaonensis: VC82_553
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Entry
VC82_553 CDS
T03884
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mlt
Allomuricauda lutaonensis
Brite
KEGG Orthology (KO) [BR:
mlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
VC82_553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlt03400
]
VC82_553
Enzymes [BR:
mlt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
VC82_553
DNA repair and recombination proteins [BR:
mlt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
VC82_553
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
TGT_C2
Motif
Other DBs
NCBI-ProteinID:
AKA34227
UniProt:
A0A0D5YPS4
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All DBs
Position
complement(584039..585010)
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AA seq
323 aa
AA seq
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MADVHHLENLATVLVLDIMEKENPKITLTHGDKLLFPASGIPKSGIVGYYERIADYMLPY
LKDRPLTMRRFTDGIDQEGFYQKNASDHFPNWIQTARVKKEDGWLNQVLCNNKETLAYLA
NQDVIEFHVTLGKVHRLDYPDKLVFDLDPPNGNFSLVIKAAKALHDLLEQKMGLHTFVMT
TGSRGLHIAAPLDGTQNFDETREFAKRVADYLCRRNPKEFTTAIRKKDRKNRLFVDYLRN
AYAQTAIAPFSVRALKGAPVATPLYWSELDNKKLNAQSFDINSIFQRLKKKGDPWSDFNA
HAKSQKKSSEKLDDLLQEHVSVS
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtgcatcatttagaaaatttggcaactgtgttagttttggatatcatggaa
aaggaaaaccctaaaataacactgacccatggcgacaagctgctctttcccgcttcaggg
atccccaaaagcggaatagtggggtattacgaacgtattgcagactatatgctgccctat
ttgaaagaccgcccgttgaccatgagacgtttcactgacggcatagaccaagaaggcttt
tatcaaaaaaatgcgtcagatcattttccgaactggatacagaccgcaagggtaaaaaaa
gaagatggatggctcaaccaagtgctttgcaacaacaaagaaaccttggcgtaccttgcc
aatcaagatgtcatcgagtttcacgtgacgcttggcaaagtgcataggctggactatcct
gataaactggtttttgatctagatccgcctaacggcaacttttctttggtgataaaggcg
gccaaggcacttcacgacctgcttgaacagaagatggggctgcatacttttgtgatgacc
acggggtcaagggggcttcacatagccgcacccttagacggcacccaaaattttgacgag
acccgtgaatttgccaagagagtggccgactacctctgccgaagaaaccccaaagagttc
accacagccatcagaaaaaaagaccgaaagaacagactctttgtcgattacctgagaaac
gcgtatgcccagacggcaattgcgccattttcggtaagggccttgaaaggagcacctgtg
gccacccccttgtactggagcgaacttgacaataaaaaactcaatgcccaaagctttgac
atcaactccatttttcagcgattaaagaaaaagggcgacccttggtcagatttcaacgca
catgccaaaagccagaaaaaatccagtgaaaaactggatgaccttttacaagaacatgtc
agcgtttcgtga
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