KEGG   Allomuricauda lutaonensis: VC82_553
Entry
VC82_553          CDS       T03884                                 
Name
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mlt  Allomuricauda lutaonensis
Brite
KEGG Orthology (KO) [BR:mlt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    VC82_553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mlt03400]
    VC82_553
Enzymes [BR:mlt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     VC82_553
DNA repair and recombination proteins [BR:mlt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     VC82_553
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_primase_S TGT_C2
Other DBs
NCBI-ProteinID: AKA34227
UniProt: A0A0D5YPS4
LinkDB
Position
complement(584039..585010)
AA seq 323 aa
MADVHHLENLATVLVLDIMEKENPKITLTHGDKLLFPASGIPKSGIVGYYERIADYMLPY
LKDRPLTMRRFTDGIDQEGFYQKNASDHFPNWIQTARVKKEDGWLNQVLCNNKETLAYLA
NQDVIEFHVTLGKVHRLDYPDKLVFDLDPPNGNFSLVIKAAKALHDLLEQKMGLHTFVMT
TGSRGLHIAAPLDGTQNFDETREFAKRVADYLCRRNPKEFTTAIRKKDRKNRLFVDYLRN
AYAQTAIAPFSVRALKGAPVATPLYWSELDNKKLNAQSFDINSIFQRLKKKGDPWSDFNA
HAKSQKKSSEKLDDLLQEHVSVS
NT seq 972 nt   +upstreamnt  +downstreamnt
atggctgatgtgcatcatttagaaaatttggcaactgtgttagttttggatatcatggaa
aaggaaaaccctaaaataacactgacccatggcgacaagctgctctttcccgcttcaggg
atccccaaaagcggaatagtggggtattacgaacgtattgcagactatatgctgccctat
ttgaaagaccgcccgttgaccatgagacgtttcactgacggcatagaccaagaaggcttt
tatcaaaaaaatgcgtcagatcattttccgaactggatacagaccgcaagggtaaaaaaa
gaagatggatggctcaaccaagtgctttgcaacaacaaagaaaccttggcgtaccttgcc
aatcaagatgtcatcgagtttcacgtgacgcttggcaaagtgcataggctggactatcct
gataaactggtttttgatctagatccgcctaacggcaacttttctttggtgataaaggcg
gccaaggcacttcacgacctgcttgaacagaagatggggctgcatacttttgtgatgacc
acggggtcaagggggcttcacatagccgcacccttagacggcacccaaaattttgacgag
acccgtgaatttgccaagagagtggccgactacctctgccgaagaaaccccaaagagttc
accacagccatcagaaaaaaagaccgaaagaacagactctttgtcgattacctgagaaac
gcgtatgcccagacggcaattgcgccattttcggtaagggccttgaaaggagcacctgtg
gccacccccttgtactggagcgaacttgacaataaaaaactcaatgcccaaagctttgac
atcaactccatttttcagcgattaaagaaaaagggcgacccttggtcagatttcaacgca
catgccaaaagccagaaaaaatccagtgaaaaactggatgaccttttacaagaacatgtc
agcgtttcgtga

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