Mirounga leonina (Southern elephant seal): 118024771
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Entry
118024771 CDS
T07472
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx04151
PI3K-Akt signaling pathway
mlx04510
Focal adhesion
mlx04512
ECM-receptor interaction
mlx04611
Platelet activation
mlx04820
Cytoskeleton in muscle cells
mlx04926
Relaxin signaling pathway
mlx04933
AGE-RAGE signaling pathway in diabetic complications
mlx04974
Protein digestion and absorption
mlx05146
Amoebiasis
mlx05165
Human papillomavirus infection
mlx05205
Proteoglycans in cancer
mlx05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
118024771 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118024771 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118024771 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118024771 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
118024771 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
118024771 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
118024771 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
118024771 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
118024771 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
118024771 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
118024771 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
118024771 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mlx00536
]
118024771 (COL1A1)
Glycosaminoglycan binding proteins [BR:
mlx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118024771 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
118024771
NCBI-ProteinID:
XP_034882768
LinkDB
All DBs
Position
Unknown
AA seq
1460 aa
AA seq
DB search
MFSFVDLRLLLFLAATALLTRGQEEGQEEDIPPVTCVQNGLRYYDRDVWKPEACRICVCD
NGNVLCDDVICDETKNCPGAQVPPGECCPVCPDGEASPTDQETAGVEGPKGDTGPRGPRG
PAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGGISVPGPMGPS
GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER
GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR
GLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSE
GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPS
GPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGTRGEPGPTGLPGPP
GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP
GSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP
GAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPSGPPGEAGKPGEQGVP
GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP
GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGEA
GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA
GPTGPPGAIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE
GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP
GQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSP
GRDGSPGPKGDRGETGPSGPPGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPVGPVGAR
GPTGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPAGPPGSPGEQGPSGASGPAGPRGPP
GSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQP
PQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKM
CHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPHVAQKNWYISKNPKDKRHV
WYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNL
KKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAP
LDIGAPDQEFGMDVGPVCFL
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcttcttagcggccaccgccctcctgacg
cgcggccaagaggagggccaagaagaagacatcccaccagtcacctgcgtacagaacggc
ctcaggtactatgaccgagacgtatggaaacccgaggcctgtcggatctgtgtctgcgac
aacggcaacgtgttgtgcgatgacgtgatctgcgacgaaaccaagaactgtcccggcgcc
caagtccccccgggcgagtgctgccccgtctgccccgacggcgaggcgtctcccaccgac
caagaaaccgcaggagttgagggacccaagggagacactggcccccgaggtccaagggga
cctgccggcccccctggccgagatggcatccccggacagcctggacttcccggacccccc
gggcctcccggaccccccggaccccctggcctcggaggaaactttgctccccaaatgtct
tatggctacgatgagaaatcaactggaggaatctccgtgcctggccccatgggtccttct
ggtcctcgtggtctccctggcccccctggtgcacctggtccccaaggtttccaaggcccc
cctggtgagcccggcgagcctggagcctcaggtcccatgggtccccgtggtccccctggc
ccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgtcctggtgagcgt
ggacctcctggacctcagggtgctcggggattgcctggaacagctggccttcctggaatg
aagggacacagaggtttcagtggtttggatggtgccaagggagatgctggtcctgctggt
cctaagggtgagcccggtagccctggtgaaaacggagctcctggtcagatgggcccccgt
ggtctgcctggtgagagaggtcgccccggagcccccggccctgccggtgctcgtggaaac
gatggtgctaccggtgcagctgggccccccggtcccactggccccgccggtccccctgga
ttccctggtgctgttggtgctaagggtgaagctggtccccaaggagcccgtggctctgaa
ggtccccagggtgtgcgtggtgagcccggcccccctggccctgctggtgctgctggtcct
gctggaaaccctggtgctgacggacagccgggtgctaaaggtgctaatggcgctcctggc
attgctggtgctcccggcttccctggtgcccgaggcccctctggaccccagggccccagc
ggtcctcctggtcccaagggtaacagcggtgaacctggcgctcctgggaacaaaggggac
actggcgccaagggagagcccggccccactggtattcaaggcccccctggccctgccggg
gaagaaggaaagcgaggaacccgaggtgaacctggacccactggcctgcccggacccccc
ggcgagcgtgggggccctggtagccgtggtttccctggggcagacggcgtcgctggtccc
aagggccccgctggtgaacgtggttcccccggccccgctggccccaagggttctcctggt
gaagccggtcgccctggtgaagctggtctgcctggtgccaagggtctgactggaagtccc
ggcagtcccggtccggatggcaaaaccggcccccctggtcccgctggtcaagatggtcgc
cccggacccccaggcccccccggtgcccgtggtcaggctggtgtgatgggattccctggg
cctaaaggtgctgctggagagcctggcaaggccggagagcgaggtgtgcctgggccccct
ggtgctgttggtcctgctggcaaagacggagaagctggagctcagggagcccccggccct
gctggccccgctggtgagagaggtgaacaaggccccgctggctcgcccggattccagggt
ctccctggcccctctggtcctcccggtgaagcaggcaaacccggtgaacagggtgttcct
ggcgaccttggcgcccccggcccctctggagcaagaggcgagagaggtttccccggtgaa
cgcggcgtgcaaggcccccccggccccgcaggtccccggggagctaacggcgcccctggc
aatgacggtgctaagggtgatgctggtgcccccggagccccaggtagccagggcgctcct
ggccttcagggaatgcccggtgaacgaggcgcagctggtcttcccggccctaagggtgac
agaggtgatgctggtcccaaaggtgctgatggttctcctggcaaggatggtgtccgtggt
ttgactggccccattggtcctcctggccctgctggtgcccctggtgacaagggtgaagct
ggcccgagcggccctgctggtcccactggagctcgtggtgcccccggagaccgtggtgag
cctggtccccccggccctgctggcttcgctggcccccctggtgccgacggccaacccggt
gctaaaggcgaacccggtgatgcgggtgccaaaggcgacgctggtccccctggccccgcc
ggccccactggcccccctggcgccattggtaacgttggtgctcctggacccaaaggtgct
cgtggcagtgctggtccccctggtgctactggttttcctggtgctgctggccgagtcggc
ccccccggcccctctggaaatgctggaccccctggccctcctggccctgctggcaaagaa
ggcggcaaaggcccccgtggtgagaccggccccgccggacgtcccggtgaagtcgggccc
cccggtccccccggccccgctggcgagaagggatcccctggtgctgatggacctgctggt
gctcccggcactcccggacctcaaggcattgctggacagcgtggtgtggtgggcctgccc
ggtcagcgaggagagagaggcttccccggtcttcccggcccttctggtgaacctggcaaa
caaggtccttctggagcaagtggtgagcgtggcccccctggtcccatgggcccccctgga
ttggctggaccccctggcgagtctggacgtgagggatctcctggtgctgaaggttccccc
ggacgagatggttctcctggccccaagggtgaccgtggtgagaccggcccttctggaccc
cctggtgctcctggtgctcctggtgcccctggccccgttggccctgctggcaagaatggc
gaccgtggcgagactggtcctgctggtcctgccggcccagtcggccccgttggtgctcgt
ggtcccactggaccccaaggtccacgtggtgacaagggtgagacaggcgaacagggtgac
agaggcataaagggtcaccgtggcttctctggtctccagggtcccgctggtcctcctggc
tctcctggtgaacaaggtccttctggagcttctggtcctgctggtccccgaggtcccccc
ggctctgctggttctcctggcaaagacggactcaacggtctcccaggccccatcggcccc
cctggtcctcgtggtcgcactggtgatgctggtcctgttggtccccccggccctcctgga
ccccctggtccccccggtcctcccagcggcggtttcgacttcagcttcctgccccagcca
cctcaagagaaggctcacgatggcggccgctactaccgggccgatgatgccaacgtggtc
cgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcagatcgagaac
atccggagccctgaaggaagccgcaagaacccagcccgcacctgccgcgacctcaagatg
tgccactccgactggaagagcggagaatactggattgaccccaaccaaggatgcaacctg
gatgccatcaaggtcttctgcaacatggagacaggcgagacttgtgtgtaccccactcag
cctcatgtggcccagaagaactggtacatcagcaagaaccccaaggacaagaggcacgtc
tggtacggcgagagcatgactgacggattccagttcgagtatggtggccagggctccgat
cctgccgatgtggccatccagctgacgttcctgcgcctgatgtccaccgaggcttcccag
aacatcacctaccactgcaagaacagcgtggcctacatggaccagcagactggcaacctc
aagaaggccctgctcctccagggctccaacgagattgagatccgggccgagggcaacagc
cgcttcacctacagcgtcacctacgacggttgcacgagtcacaccggagcctggggcaag
acagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgatgtggcacca
ttggacattggcgccccagaccaggaattcggcatggatgttggccctgtctgcttcttg
taa
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