KEGG   Mycobacterium marinum M: MMAR_4573Help
Entry
MMAR_4573         CDS       T00694                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mmi  Mycobacterium marinum M
Pathway
mmi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mmi00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    MMAR_4573
Enzymes [BR:mmi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MMAR_4573
DNA repair and recombination proteins [BR:mmi03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MMAR_4573
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ACC42978
UniProt: B2HEF3
LinkDB All DBs
Position
complement(5610813..5613125)
Genome map
AA seq 770 aa AA seqDB search
MGSAQAWPPGQANGPQVTLTNADKVLYPATGTTKSDVFGYYTGIAEVMIPHIAGRPATRK
RWPNGVDQASFFEKQLASSAPDWLPRASVVHRSGTTTYPIIDSATGLAWIAQQAALEVHV
PQWRFVAEWTSKGEILTPGPATRLVFDLDPGEGVTMAQLAQVARAVRDLLADIGLSTLPL
TSGSKGLHLYTPLDEPVSSKGATVLAKRVAQQLETVMPALVTATMTKSLRAGKVFLDWSQ
NSGSKTTIAPYSLRGREQPTVAAPRSWEELDDPGLRQLTYDEVLARLTRDGDLIAALDAD
LPGDDRLLKYRSMRNASKTPEPVPRARPVVGQGNTFVIQEHHARRLHYDFRLERDGVLVS
WAVPKNLPETTSVNHLAVHTEDHPLEYATFEGNIPKGEYGAGKVIIWDSGTYDTEKFRDD
SRNGSEKGEVIVNLHGSRISGRYALIQTNGDQWLAHRMKDQTAFDFDTLAPMLTSHGSVA
GLESGQWAFEGKWDGYRLLVEADHGALRLRSRSGRDVTAEYPQLRSLAADLADHHVVLDG
ELVALDSSGVPSFNEMQNRVRATRIEFWAFDLLFLDGRSLLRARYRDRRKLLETLGSAGN
LIVPELLPGDGAEALAYSHKRGWEGVIAKRRDSGYQPGRRSSAWIKDKHWNTQEVVIGGW
RVGEGGRSSGIGSLLMGIPGPSGLHFAGRVGTGFTERDLANLKKTLAPLHTDESPFDAAL
PAREAKGVTFVAPTLVGEVRYSEWTPDDRLRQSSWRGLRPDKNPSEVVRE
NT seq 2313 nt NT seq  +upstreamnt  +downstreamnt
atgggttcggcgcaggcctggcctcctggacaggcgaatggtccgcaggtgacactgacc
aacgcggacaaggtgctgtacccggctaccggaaccaccaagtctgacgtcttcggttac
tacaccggcatcgccgaggtgatgatcccgcatatcgccgggcgcccggcgactcgcaaa
cgctggcccaacggcgtcgatcaggcgtcctttttcgaaaagcagctggcgtcgtcggcg
ccggactggctgccgcgtgccagcgtggtgcaccggtcgggaacgacgacctatccgatc
atcgacagcgccaccgggctggcctggatcgcgcaacaggccgccctcgaggtgcacgtc
ccgcagtggcggttcgttgccgagtggacgtcgaaaggcgaaatcctcacgcccgggccg
gccacccgattggtgttcgacctggacccgggcgagggcgtgacgatggcccaactcgcg
caggtggcgcgggcggtgcgcgatctgctcgccgacatcggcctgagtaccctcccgctc
accagcggtagcaagggcctgcacctctacaccccgctcgacgagccggtgagcagcaag
ggcgccacggtgttggccaaacgggtcgcgcagcaactggaaacggtgatgccggcgttg
gtcaccgcgaccatgaccaagagtctgcgggccgggaaagtgttcctggactggagccaa
aacagcggttcgaagaccaccatcgcgccgtattcgctgcgtgggcgcgaacaaccgacc
gtcgccgcaccacgcagctgggaggagctcgacgacccggggctgcgccagctgacctac
gacgaggtgcttgcccgcctcacccgcgatggcgatctgattgcggcgctggacgcggac
ctccccggcgacgaccggctgctcaaatatcgcagcatgcgcaacgcgtcgaaaacgccg
gagccggtgccccgagccagacccgttgtcgggcagggtaataccttcgtgatccaagag
catcacgcgcgccgtctgcattacgacttcaggctggagcgtgatggggtactggtgtca
tgggcggtgccgaaaaacctgccggaaaccacgtcggtgaaccacctggccgtgcacacc
gaagatcatccgctggaatacgcgacgttcgagggcaacatcccgaaaggggagtacggc
gccggcaaggtgatcatctgggattccggcacctatgacaccgagaagttccgcgacgac
tcgagaaacggttcggaaaagggggaggtgattgtcaacctgcacggcagtcgaatctcg
gggcggtacgcgctgattcagaccaacggggaccaatggctggcgcatcgcatgaaggac
cagacggccttcgatttcgacaccctcgcgcccatgctcacctcccacggttcggtggca
ggtctcgagtcgggtcagtgggcgttcgaaggcaagtgggacggctaccggctgctggtc
gaagccgaccatggcgcgctgcgactgcgctcccgcagcggacgtgacgtcaccgcggaa
tacccccaattacgttcattggccgccgatctcgctgatcaccacgtggtgctcgacggg
gaattggtggccctcgactcctccggagtgcccagcttcaacgagatgcagaaccgggtg
cgcgccacccgcatcgagttctgggcgttcgacttgctctttctggacggtcgctcgcta
ctgcgggccagataccgcgaccggcgcaagctactggaaaccctgggcagtgcgggcaat
ctgatcgttccggagttgttgcccggtgacggcgccgaggcgctggcctactcgcacaag
cgcggttgggagggagtcattgccaagcgccgcgactccggctatcaacccgggcggcgc
tcgtcggcgtggatcaaggacaaacactggaacacccaggaagtcgtcatcggcggttgg
cgagttggggagggtgggcgcagcagcgggattggatcgttgctcatgggcattcccggc
ccgagcggtttgcacttcgccggccgtgttggaaccggcttcaccgaacgtgacctggcc
aacctcaagaagacgctggcgccgctgcataccgacgaatccccattcgacgctgcgctt
ccggcgcgcgaggccaagggtgttacgttcgtcgcgccgacgctggtcggggaggtgcgc
tatagcgagtggacccccgatgaccgattgcggcaatccagctggcgtgggttgcgcccg
gacaaaaacccgagtgaggtggtgcgcgaatga

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