Methanococcus maripaludis S2: MMP0970
Help
Entry
MMP0970 CDS
T00164
Symbol
lig
Name
(GenBank) ATP-dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mmp
Methanococcus maripaludis S2
Pathway
mmp03030
DNA replication
mmp03410
Base excision repair
mmp03420
Nucleotide excision repair
mmp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MMP0970 (lig)
03410 Base excision repair
MMP0970 (lig)
03420 Nucleotide excision repair
MMP0970 (lig)
03430 Mismatch repair
MMP0970 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmp03032
]
MMP0970 (lig)
03400 DNA repair and recombination proteins [BR:
mmp03400
]
MMP0970 (lig)
Enzymes [BR:
mmp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MMP0970 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
MMP0970 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
MMP0970 (lig)
DNA replication proteins [BR:
mmp03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
MMP0970 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
MMP0970 (lig)
DNA repair and recombination proteins [BR:
mmp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
MMP0970 (lig)
NER (nucleotide excision repair)
Other NER factors
MMP0970 (lig)
MMR (mismatch excision repair)
Other MMR factors
MMP0970 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Arc_PepC
L27_2
Motif
Other DBs
NCBI-ProteinID:
CAF30526
UniProt:
Q6LYM1
LinkDB
All DBs
Position
956353..958074
Genome browser
AA seq
573 aa
AA seq
DB search
MLFSDFCKILDKIEKTTKRLEKTDYFVELIDFIKTSEKPENLKQVSQITIGRVFAEFENK
EIGIGPNLLLEAVKTTGIPEKDLKSKIKETGDIGTAVENLSSNIKQVSLFSQALTLEEVY
STLKKLSEIEGNSSQKKKTRIISNLLILADPVESRYISRLILEDMRIGMNIPTILASFSN
YFNVNKESVEKIYAVTNDIGLLGEKLISGSDIENDPELKLKVFRPIKPMLAQLTPSIEDA
MIETKMPQFETKYDGARVQVHKSNGDVKIYSRRLENITNSVPELVEEIKKLDIDNIILEG
ECVAMDLDSGKPRPFQDILRRFRRKYNIDKMAEKIALRIYFFDVLYYNRGLIDTPLKTRR
EILEKLFGTNNWDSELEKIKKEIFSSKMLFSSFKLNSGDPNLVKEFFNWSLSIGHEGIMI
KNPDAPYTPGSRVKTMYKVKPTLENLDVVVTRAKIGMGKRKDWYGSYELSVKDNDGNLHV
IGNVGSGLTEDDLEKLTKIVNEIKIEDLGEEVILEPKIVLEVTYEEIQTSEKYEMGYALR
FPRVVQIREDKSINDINTLDDVKKIYEIERNRK
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgctttttagtgatttttgtaaaattcttgataaaattgaaaaaactacgaaaagactt
gaaaaaacagactattttgtagaattaatcgattttatcaaaactagtgaaaaacctgaa
aatttaaaacaagtgtcacaaatcacgattggaagggtttttgcagaatttgaaaacaaa
gaaattgggattgggccaaacttgttgcttgaagcagtgaaaaccacagggatacctgaa
aaagatttgaaatcaaaaattaaagaaaccggagacattggaactgctgttgaaaattta
agttcaaatataaaacaggtttcattgttcagccaagcacttacgcttgaagaagtgtat
tccacattaaaaaaactttcagaaattgaaggaaattcctcacaaaaaaagaaaacaaga
ataatttcaaatttactaattttagcagaccctgttgaatcaagatacatttcaaggctt
attttagaagatatgcggattggaatgaacattccaacaattttagcctcattttcaaat
tattttaatgttaataaggaatctgtcgaaaaaatatatgccgttacaaatgatattgga
cttttgggcgaaaagttaatttctggctcagacattgaaaacgatcccgaattaaaatta
aaagtattcaggccgataaaacctatgcttgcacagctaactccatcaattgaagatgcg
atgattgagactaaaatgccccaatttgaaactaaatacgatggtgcaagagttcaagtg
cataaatcgaatggagacgtaaagatatacagcagaaggcttgaaaatattacaaattcg
gttccagaactcgttgaagaaatcaaaaaactagatattgataatatcatattagaaggg
gaatgcgttgcaatggatttagattcgggaaaaccaagacctttccaggatattttaaga
aggttcaggcgaaaatataatattgataaaatggccgaaaaaatagctttaagaatatat
ttcttcgatgttttatactacaaccgaggtttaatcgatactccactaaaaaccagaagg
gaaattttagaaaaactatttggaacaaataactgggatagtgaattagaaaaaattaaa
aaagagatattttctagcaaaatgctattttcatcgtttaaattaaatagtggtgatcca
aatcttgtaaaagaattttttaactggagtttaagtatcggtcatgaaggaatcatgatt
aaaaaccctgatgcaccatacacccctggaagccgtgttaaaactatgtataaagttaaa
ccaacgttagaaaatcttgatgttgttgtaacccgtgcaaaaattggaatgggaaaaaga
aaagactggtacggttcatatgaactctccgtgaaagataatgatggcaacttacacgtt
atcggaaacgttggaagcggactcactgaagacgaccttgaaaaactcacaaaaatagtt
aatgaaataaaaatcgaagatttgggtgaagaagtaattttagaacctaaaatcgtactt
gaagtaacttacgaagaaattcagacttctgaaaaatatgaaatgggttatgccttacgt
tttccaagagttgtccagataagggaagacaaatctataaatgacattaataccttagat
gatgtgaagaaaatatacgaaatagaacgaaacagaaaataa
DBGET
integrated database retrieval system
