Microcebus murinus (gray mouse lemur): 105855003
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Entry
105855003 CDS
T07238
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mmur
Microcebus murinus (gray mouse lemur)
Pathway
mmur03013
Nucleocytoplasmic transport
mmur03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmur00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105855003 (UPF1)
03015 mRNA surveillance pathway
105855003 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmur03019
]
105855003 (UPF1)
Enzymes [BR:
mmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105855003 (UPF1)
5.6.2.5 RNA 5'-3' helicase
105855003 (UPF1)
Messenger RNA biogenesis [BR:
mmur03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105855003 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
105855003 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
105855003
NCBI-ProteinID:
XP_012591106
Ensembl:
ENSMICG00000001659
UniProt:
A0A8B7EAU6
LinkDB
All DBs
Position
24:complement(43978..76617)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGCPGGPGGGGAG
GPGGAGAGAATGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNTNLTQRTDYGDEIAIELRSSVGA
PVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPK
RFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA
PSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLK
DETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQA
TEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQ
YRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSG
TSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEV
EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK
QPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPATGCVGGSSRVAGEFL
TCLPPAQGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAA
MNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTTLPSS
QASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacacggaggag
gccgagctgctcggcgccgacactcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccccccggctgccccggcgggcccgggggcggcggcgcggga
ggcccgggcggcgcgggcgcgggcgccgcgacgggacagctcgacgcgcaggtggggcct
gagggcatcctgcagaacggggccgtggacgacagcgtggccaagaccagccagctgctg
gccgagctgaacttcgaggaggatgaggaggacacctactacacgaaggacctgcccatt
cacgcctgcagttactgcggcatccatgatcctgcctgcgtggtttactgcaacaccagc
aagaagtggttctgcaacgggcgagggaacacttctggcagccacattgtaaatcacctc
gtgcgggccaagtgcaaggaggtgactctgcacaaggacgggcccctgggcgagacggtg
ctcgagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatccccgccaag
gccgactcggtggtggtgctgctgtgcaggcagccctgcgccagccagagcagcctcaag
gacatcaactgggacagctcgcaatggcagccgctgatccaggaccgctgcttcctgtcc
tggctggtgaagatcccctccgagcaggagcagctgcgggcgcggcagatcaccgcccag
cagatcaacaagctggaggagctctggaaggagaacccctccgccacgctggaggacctg
gagaagccgggggtggacgaggagccgcagcacgtgctcctgcgctacgaggacgcctac
cagtaccagaacatcttcgggccgctggtcaagctggaggccgactacgacaagaagctg
aaggagtcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggacgagatctgcctgcgctacaagggcgac
ctggcgcccctgtggaaggggatcggccacgtcatcaaagtccctgataacacaaactta
actcagcgcacagattatggtgacgagatcgccatcgagctgcggagcagtgtgggggcg
cccgtggaggtgactcacaatttccaggtggacttcgtgtggaagtccacctcgttcgac
aggatgcagagcgcgctgaagaccttcgcggtggacgagacctccgtgtccggctacatc
taccacaagctgctgggccacgaggtggaggacgtgatcatcaagtgccagctgccgaag
cgcttcacggcgcagggcctccccgacctcaaccactctcaggtttacgccgtgaagact
gtgctgcagaggccgctgagcctgatccagggccctccgggcacggggaagacggtgacc
tcggccaccatcgtctaccacctggcgcggcaaggcaacgggcccgtgctcgtctgcgcc
ccgagcaacatcgcggtggaccagctgacggagaagatccaccagacggggctgaaggtg
gtgcgcctctgcgccaagagccgggaggccatcgactccccggtgtcgttcctggccctg
cacaaccagatcaggaacatggacagcatgcccgagctgcagaagctgcagcagctgaag
gacgagaccggcgagctgtcgtctgcggacgagaagcggtaccgggccctgaagcgcacc
gccgagagggagctgctcatgaacgcggacgtcatctgctgcacgtgcgtgggcgccggg
gacccgcggctcgccaagatgcagttccgctccatcctcatcgacgagagcacccaggcc
accgagcccgagtgcatggtccccgtggtgctcggcgccaagcagctgatcctagtgggc
gaccactgccagctgggcccggtggtgatgtgcaagaaggccgccaaggccgggctgtca
cagtcgctgttcgagcgcctggtggtgctgggcatccggcccatccgcctgcaggtgcag
taccggatgcaccccgcgctcagcgccttcccctccaacatcttctacgagggctcgctg
cagaacggcgtcaccgcagcggaccgcgtgaagaaggggtttgacttccagtggccgcag
ccggataagcccatgttcttctacgtgacgcagggacaggaggagatcgccagctcgggc
acctcctacctgaacaggaccgaggccgccaacgtggagaagatcaccacgaagctgctg
aaggcgggcgccaagccggaccagatcggcatcatcacgccgtacgagggccagcgctcc
tacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaggtg
gagatcgccagcgtggacgccttccagggccgcgagaaggacttcatcatcctgtcctgc
gtgcgcgccaacgagcaccagggcatcggcttcctcaacgatccccggcgcctcaacgtg
gccctgaccagagccaggtacggcgtcatcatcgtgggcaaccccaaggcgctgtcgaag
cagccgctgtggaaccacctgctcaactactacaaggagcagaaggtgctggtcgagggc
ccgctcaacaacctgcgcgagagcctcatgcagttcagcaagccgcgcaagctggtcaac
accatcaacccggccaccggctgtgtgggaggctcttcccgagtcgctggcgaattcctc
acctgcctgccgcccgcgcagggggcccgcttcatgacgacggccatgtacgacgcgcgg
gaggccatcatcccgggctcggtctacgatcgcagcagccagggccggccctcgaacatg
tacttccagacccacgaccagatcggcatgatcagcgcgggccccagccacgtggccgcc
atgaacatccccatccccttcaacctggtcatgccgcccatgccgcctccgggctacttc
ggacaggccaacggcccggctgcaggccggggcaccccgaaaggcaagactgggcgtggg
gggcgccagaagaaccgcttcgggctgcccgggcccagccagaccaccctccccagcagc
caggccagccaggacgtggcatcgcagcccttctcccagggcgccctgacgcagggctac
atctccatgagccagccctcccagatgagccagcccggcctctcgcagcccgagctgtcc
caggacagctacctcggcgatgagtttaagtcacagatcgatgtggcactctcacaagac
tccacgtaccagggagagcgggcgtaccagcatggcggggtgacggggctgtcccagtac
tag
DBGET
integrated database retrieval system
