Mycobacteroides abscessus subsp. massiliense GO 06: MYCMA_0544
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Entry
MYCMA_0544 CDS
T02177
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmv
Mycobacteroides abscessus subsp. massiliense GO 06
Pathway
mmv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYCMA_0544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmv03400
]
MYCMA_0544
Enzymes [BR:
mmv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYCMA_0544
DNA repair and recombination proteins [BR:
mmv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYCMA_0544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AFN62709
LinkDB
All DBs
Position
complement(3721849..3724101)
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AA seq
750 aa
AA seq
DB search
MLYPATDTSPATTKADVFGYYTAIAPFMLPHIAGRPVTRKRWPNGVDQPSFFEKDLASSA
PDWLPRRRIEHKSRYVSYPLIDTSVALAWIAQQAALEVHVPQWRFAGENPGPATRLVFDL
DPGEGVGMAQLAEVARAIRDVLADIGLKTFPVTSGSKGLHLYVPLAQPASSSGAVAVAKK
VAVQLEQAMPDLVTATMTRQLRAGKVFVDWSQNSGSKTTVAPYSLRGRAVPTVAAPRTWE
ELDDPGLRQLRYDEVLTRAQRDGDLLAGLDDVEIAEDRLSTYRSMRDPARTPEPVPAIKP
EAGQNNSFVIQEHHATALHYDFRLERDGVLVSWAVPKNLPLEPSVNHLAVHTEDHPLEYG
SFEGTIPKGEYGAGEVTIWDSGTYDTEKFIDPRDDSGADGGQKGEVIVTLHGKRITGRYA
LIRTSGKQWLAHRMKDQRPAGSMPVGLAPMLPTTGSVAGLTAEEWAFEGKWDGYRLILEC
DRGQLRALARSGRDVTAEFPALQRLAHELSDHRVVLDGEVVVPDQKGLPSFALLQNRTPG
ADIRFWAFDLLYLDGKSLLRTKYRDRRRLLEVLVTGAESMTVPRQLSGDGAAALAYSQDQ
GWEGVVAKRLDSPYVPGRTQSWIKAKNWSSQEVVIGGWRKGQGGRSSGIGALLMGIPVEG
GLRYAGRVGTGFTEKELSSLKERLEPLHRAESPFDVPLSTVEAKDVQFVEPVLVAEVRYG
DRTPGGILKHSSWRGLRTDKSVRDVELDLG
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtgctgtacccggccacggataccagcccggccaccaccaaagcggatgtcttcggctac
tacaccgcgatcgcccccttcatgttgccgcatatcgcgggccggccggtcacccgcaag
cggtggcccaacggcgttgaccagccgtcgttcttcgagaaggacctggcttcttcggcg
cccgactggctgccgaggcgccgtatcgagcacaagtcccgctacgtcagctacccgctg
atcgacacctcggtcgccttggcgtggatcgcgcagcaggcggcgctcgaggtgcacgtg
ccacagtggcgattcgccggtgaaaatccaggtccggcaacccggttggtgttcgacctg
gatcctggcgagggggtcggcatggcccaactggcggaagtggccagggccatccgggat
gtgctcgccgatatcggcctgaagacctttccggtgaccagtggaagcaagggcttgcac
ctgtacgtgccgctggcgcaaccagccagctcgtccggtgcggtcgctgtggcgaagaag
gttgccgtccagttggagcaggcgatgcccgacttggtgacggcgacgatgacccgacag
ctacgcgcgggcaaggtcttcgtggattggagccagaacagcggttccaagacgacggtg
gcgccctactcattacgtggccgggcggtgccgaccgtcgccgcgccgcgcacgtgggaa
gaactggacgaccccggcctgcgtcagctgcgatacgacgaagtgctgacgcgggcccag
cgtgacggcgacctgctggccgggctcgatgatgtcgagatcgccgaggacaggctgtcc
acctatcgcagcatgcgcgatcccgcacgcacgcctgaaccggtaccggcgatcaaaccc
gaagctgggcaaaataattcatttgtcatccaggagcatcacgccaccgcgctgcactac
gacttccggctggagcgcgatggcgtgctggtgtcgtgggcggtgcccaagaacctgccc
ttggaaccgtcggtcaatcatcttgcggtgcacaccgaggatcatccgctggagtacggc
tccttcgaaggcaccatcccgaagggagagtatggggcgggcgaggtgacgatctgggac
tcgggcacttacgacaccgagaagttcatcgacccgcgcgacgattcaggagccgacggc
gggcaaaaaggtgaggtcatcgtcaccctccacggcaagcgaatcaccgggcggtacgcg
ctgattcgaaccagcggcaagcagtggctggcgcaccggatgaaggatcagcggcccgca
ggttcgatgcccgtcggtctcgcgccgatgttgccgaccaccgggtcggtggcgggtctg
accgccgaagaatgggcgttcgaaggcaaatgggacggctatcggctgatcctggaatgc
gatcgcggacagctcagggcattggcgcgcagcgggcgcgacgtcacggccgaattcccg
gcgttgcaacggcttgcgcatgaactgtccgatcaccgggtggtgctcgacggcgaggtg
gtggtgccggatcagaagggcctgcccagctttgcgctgctgcagaacaggacaccgggc
gccgacatcaggttctgggctttcgatctgctgtatctggacggaaaatcgttgttgcgt
accaagtatcgggaccgacgtcgactgcttgaggtgcttgttaccggcgccgaatcgatg
acagtcccgcggcagttgagcggcgacggtgccgcggcccttgcgtactcgcaggatcaa
ggctgggagggcgtggtggccaagaggctggattccccctacgttcccggccgaacacag
tcttggatcaaggcgaagaactggagtagtcaagaggtcgtcatcggcggctggcgcaag
gggcagggcggtcgcagcagcggaataggggccctgctcatgggaatacctgtcgagggt
ggtctgcgctatgcgggccgggtcggtaccggattcaccgagaaggaactgtcatcgctg
aaggagcgtctagagcccctgcaccgcgccgaatcgccctttgatgtgccgctgtccacc
gtcgaggccaaggacgtgcagttcgtcgagccggtgttggtggccgaagtccgatacggc
gaccgcaccccgggcggaattctgaagcactcaagttggcgcgggctgcgcaccgacaag
tcagttcgcgacgtcgagctcgatctcgggtag
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